7zla_B : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE HALF-CLOSED CONFORMATION
experiment	NMR
structural superfamily	PLP-dependent transferases;"Winged helix" DNA-binding domain;
sequence family	Bacterial regulatory proteins, gntR family;
multimeric complexes	7zla_AB 7zn5_AB 7zpa_AB 7zth_AB
redundant complexes	7zn5_B 7zpa_A 7zth_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zla_B interface=11,36,37,46,47,48,49,51,68, elnrdlptplYeqlyahikteitegrigygtklpsKRkladslklSQNTvEaayeqlvaegyvevipRkgfyvqayedleyirapqapgdalatkqdtirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf
interface signature	YKRSQNTER

Estimated binding specificities ?

contact

# IC=3.003 IC/col=0.065 n_of_columns=46

specificity:

A |  24  22  14  34   4   0  15  16  63  23  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24
C |  24  22  14  22  81  96  17  45  10  21  30  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24
G |  24  22  54  20   4   0  15  16  13  21  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24
T |  24  30  14  20   7   0  49  19  10  31  22  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24

scan!

home
updated Wed Dec 20 00:29:41 2023