7zpa_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE CLOSED CONFORMATION, C1 SYMMETRY
experiment	NMR
structural superfamily	PLP-dependent transferases;"Winged helix" DNA-binding domain;
reference complex	7zla_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zpa_A interface=29,38,39,40,60, plyeqlyahikteitegrigygtklpskRkladslklSQNtveaayeqlvaegyvevipRkgfyvqakqdtirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf > 7zpa_B interface=36,37,46,47,48,51,68, elnrdlptplyeqlyahikteitegrigygtklpsKRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayedleydtirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf
interface signature	RSQNR/KRSQNER

Estimated binding specificities ?

contact

# IC=12.232 IC/col=0.272 n_of_columns=45

specificity:

A |  82   0   0   4  82  24  24  82  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  82   4  24  24   0   0   0   4
C |   4  96   0   6   6  24  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   4  24  24   0   0   0  82
G |   4   0   0  82   4  24  24   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   6  24  24  96  96   0   6
T |   6   0  96   4   4  24  24   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6  82  24  24   0   0  96   4

scan!

home
updated Sun Dec 15 21:04:55 2024