7zpp_ADIN : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE MVV CSC INTASOME AT 4.5A RESOLUTION
source	VISNA/MAEDI VIRUS EV1 KV1772
experiment	NMR
structural superfamily	Ribonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
reference complex	7u32_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zpp_A interface=29,33,49,230, ieniplaeeehnkwhqdavslhlefgipRtaaEdivqqcdvcqenkmpStlrgsnkrgidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkRghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 7zpp_D interface= idhwqvdythyedkiilvwvetnsgliyAervKgetgqefrvqtmkwyAmfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfippp > 7zpp_I interface=147,150,154,157, ieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpQsqAlveRthQtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 7zpp_N interface= niplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkkrgidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqTlkNtleKliPmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk
interface signature	RESR/AKA/QARQ/TNKP

Estimated binding specificities ?

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# IC=6.350 IC/col=0.423 n_of_columns=15

specificity:

A |   0   0   0  73   7  24  24  24  24  24  24  24  24   7   7
C |   0  96   0   9   9  24  24  24  24  24  24  24  24  73   7
G |  96   0  96   7  73  24  24  24  24  24  24  24  24   0  73
T |   0   0   0   7   7  24  24  24  24  24  24  24  24  16   9

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updated Sun Dec 15 21:05:37 2024