8aan_A : 3D-footprint complex

structure name	THE NUCLEOPROTEIN COMPLEX OF REP PROTEIN WITH ITERON CONTAINING DSDNA AND DUE SSDNA. (Replication initiation protein)
reference	Nowacka et al. 'Nucleic 51 10551 2023
source	Escherichia coli
experiment	X-ray (resolution=2.19, R-factor=0.189)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	8ac8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8aan_A interface=66,67,68,70,71,74,104,177,178,180,182,183,186,187,213, tavinhkkrknsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffiglqnrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrditsm
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

readout + contact

# IC=13.889 IC/col=0.772 n_of_columns=18

specificity:

A |   5   0   0   0  96   0  80  24  24  24  24  10   0   0  24  90   5  90
C |   5   0   0   0   0  96   5  24  24  24  24  10  96  96  24   1  74   0
G |  12  96   0  96   0   0   5  24  24  24  24  66   0   0  24   0  12   6
T |  74   0  96   0   0   0   6  24  24  24  24  10   0   0  24   5   5   0

scan!

home
updated Sat Aug 2 22:49:09 2025