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structure nameTHE NUCLEOPROTEIN COMPLEX OF REP PROTEIN WITH ITERON CONTAINING DSDNA AND DUE SSDNA.
(Replication initiation protein)
referenceNowacka et al. 'Nucleic 51 10551 2023
sourceEscherichia coli
experimentX-ray (resolution=2.19, R-factor=0.189)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex8ac8_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=13.688 IC/col=0.760 n_of_columns=18 specificity:   
A |   0   5   5  24   0   0  11  24  24  24  24   5   0   0   0  96   0  76
C |   5  10   6  24   0   0  70  24  24  24  24   5   0   0  96   0  96   5
G |   1  75   5  24  96  96  10  24  24  24  24   5  96   0   0   0   0   5
T |  90   6  80  24   0   0   5  24  24  24  24  81   0  96   0   0   0  10
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updated Fri Sep 13 09:46:14 2024