8att_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 4-MER RNA, PPPGPGPUPA (IC4)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8att_A interface=204,208,209,393,395,583,586,588,589,590,591,596,616,693,702, alnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnstggviegmrtaravisvgkaiemefrseqvlksesqakilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhngSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdrsnrcdtnykleiaraflgeklyfphnldfrgRaYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkqtvmTnvYgVTYVgatfQiakqlspifddrkesldfsKyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnarrqkaglppnfihsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8att_B interface=53,100,102,103,104,145,148,333,334,338, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsegLimQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMYqteHsg
interface signature	YSKRYTYVTYVQKQF/YDYDWLQMYH

Estimated binding specificities ?

contact

# IC=8.009 IC/col=0.308 n_of_columns=26

specificity:

A |  24  24  24  24  24  24   0   0  52  22   0  16   0  45  67   0  70  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  96   0  14  27  96  19  96  16  11   0   8  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24   0   0  14  25   0  45   0  16   9   0   8  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24   0  96  16  22   0  16   0  19   9  96  10  24  24  24  24  24  24  24  24  24

scan!

home
updated Sun Dec 17 19:08:13 2023