8att_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 4-MER RNA, PPPGPGPUPA (IC4)
experiment	NMR
structural superfamily	DNA/RNA polymerases;S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	6ymv_A 6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8att_A interface=204,208,209,393,395,583,586,588,589,590,591,596,616,693,702, alnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnstggviegmrtaravisvgkaiemefrseqvlksesqakilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhngSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdrsnrcdtnykleiaraflgeklyfphnldfrgRaYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkqtvmTnvYgVTYVgatfQiakqlspifddrkesldfsKyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnarrqkaglppnfihsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8att_B interface=53,100,102,103,104,143,145,147,148,333,334,338, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMYqteHsg
interface signature	YSKRYTYVTYVQKQF/YDYDWELMQMYH

Estimated binding specificities ?

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# IC=11.137 IC/col=1.012 n_of_columns=11

specificity:

A |   0  96   0  96   0  13  96  24  16  96   0
C |   0   0   0   0   0  13   0  24  13   0   0
G |   0   0   0   0  96  13   0  24  13   0  96
T |  96   0  96   0   0  57   0  24  54   0   0

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updated Wed Sep 11 20:29:19 2024