8att_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 4-MER RNA, PPPGPGPUPA (IC4)
experiment	NMR
structural superfamily	DNA/RNA polymerases;S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	6ymv_A 6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8att_A interface=204,208,209,393,395,583,586,588,589,590,591,596,616,693,702, alnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnstggviegmrtaravisvgkaiemefrseqvlksesqakilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhngSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdrsnrcdtnykleiaraflgeklyfphnldfrgRaYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkqtvmTnvYgVTYVgatfQiakqlspifddrkesldfsKyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnarrqkaglppnfihsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8att_B interface=53,100,102,103,104,145,148,333,334,338, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsegLimQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMYqteHsg
interface signature	YSKRYTYVTYVQKQF/YDYDWLQMYH

Estimated binding specificities ?

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# IC=10.709 IC/col=0.974 n_of_columns=11

specificity:

A |   0   0  67  24   0   9   0  69  96   0  96
C |  96   0  11  24  96   9  96   9   0   0   0
G |   0   0   9  24   0  69   0   9   0   0   0
T |   0  96   9  24   0   9   0   9   0  96   0

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updated Wed Jan 7 18:51:50 2026