8atv_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 5-MER RNA, PPPGPGPAPAPA (IC5)
experiment	NMR
structural superfamily	DNA/RNA polymerases;S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	6ymv_A 6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8atv_A interface=137,145,148,222,224,226,227,362,409,413,597,601,604,606,609,614,711,720,733,741,745, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnsTggviegmRtaRavisvgkaiemefrseqvlksekilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilRawklqvktiankfssdrsnrcdtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVtyVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalgmsvllplrlpeippkgdfdvtvlrnsqyffs > 8atv_B interface=53,100,102,103,104,143,145,147,148,333,334, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMY
interface signature	TRRYNSKRRYQTYVVQQFRPH/YDYDWELMQMY

Estimated binding specificities ?

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# IC=14.628 IC/col=0.975 n_of_columns=15

specificity:

A |   0  96   0  96  96   0   0  96  24  67  67  96   0  24   9
C |   0   0   0   0   0   0   0   0  24   9   9   0   0  24  67
G |   0   0   0   0   0  96   0   0  24  11  11   0   0  24  11
T |  96   0  96   0   0   0  96   0  24   9   9   0  96  24   9

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updated Wed Sep 11 20:29:55 2024