8atv_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 5-MER RNA, PPPGPGPAPAPA (IC5)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8atv_A interface=137,145,148,222,224,226,227,362,409,413,597,601,604,606,609,614,711,720,733,741,745, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklnsTggviegmRtaRavisvgkaiemefrseqvlksekilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilRawklqvktiankfssdrsnrcdtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVtyVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalgmsvllplrlpeippkgdfdvtvlrnsqyffs > 8atv_B interface=53,100,102,103,104,143,145,147,148,333,334, svpipgikdisklkffygfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMY
interface signature	TRRYNSKRRYQTYVVQQFRPH/YDYDWELMQMY

Estimated binding specificities ?

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# IC=10.694 IC/col=0.396 n_of_columns=27

specificity:

A |  24  24  24  24  24  24  24  13  96   0  88  96   0   3  96  24  34  42  96  10  21  18  24  24  24  24  24
C |  24  24  24  24  24  24  24  13   0   0   2   0   0   5   0  24  20  18   0  13  21  42  24  24  24  24  24
G |  24  24  24  24  24  24  24  13   0   0   4   0  96   3   0  24  20  18   0  10  31  18  24  24  24  24  24
T |  24  24  24  24  24  24  24  57   0  96   2   0   0  85   0  24  22  18   0  63  23  18  24  24  24  24  24

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updated Sun Dec 17 19:08:50 2023