8atw_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 6-MER RNA, PPPGPGPAPAPAPU (IC6)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8atw_A interface=135,137,145,148,220,222,224,225,244,377,378,381,407,411,595,599,602,604,605,606,607,612,709,718,731,739,743, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklNsTggviegmRtaRavisvgkaiemefrseqvlkkilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerLiasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdRSnrCdtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVTYVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8atw_B interface=17,53,100,102,103,104,143,145,147,148,333, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMyqt
interface signature	NTRRYNSKLRSCRYQTYVTYVQQFRPH/YYDYDWELMQM

Estimated binding specificities ?

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# IC=11.886 IC/col=0.425 n_of_columns=28

specificity:

A |  24  24  24  24  24  24  24  14  85   0  96  96   0   0  96  24  31  31  42   0   0  24  31  24  24  24  24  24
C |  24  24  24  24  24  24  24  14   3   0   0   0   0   0   0  24  23  21  18   0   0  24  23  24  24  24  24  24
G |  24  24  24  24  24  24  24  14   5   0   0   0  96   0   0  24  21  21  18   0  96  24  21  24  24  24  24  24
T |  24  24  24  24  24  24  24  54   3  96   0   0   0  96   0  24  21  23  18  96   0  24  21  24  24  24  24  24

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updated Sun Dec 17 19:09:29 2023