8atw_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 6-MER RNA, PPPGPGPAPAPAPU (IC6)
experiment	NMR
structural superfamily	DNA/RNA polymerases;S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	6ymv_A 6ymv_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8atw_A interface=135,137,145,148,220,222,224,225,244,377,378,381,407,411,595,599,602,604,605,606,607,612,709,718,731,739,743, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklNsTggviegmRtaRavisvgkaiemefrseqvlkkilwpqsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerLiasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdRSnrCdtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkQtvmTnvYgVTYVgatfQiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFisdpfavnpvnaRrqkaglpPnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8atw_B interface=17,53,100,102,103,104,143,145,147,148,333, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlYpgvgiqsaifynkycprqysllekrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegsEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmdfvdMyqt
interface signature	NTRRYNSKLRSCRYQTYVTYVQQFRPH/YYDYDWELMQM

Estimated binding specificities ?

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# IC=12.429 IC/col=0.888 n_of_columns=14

specificity:

A |   0  96  16  24  24  24   0   0  96   0  96  96   0  54
C |  96   0  13  24  24  24  96   0   0  96   0   0   0  16
G |   0   0  13  24  24  24   0  96   0   0   0   0   0  13
T |   0   0  54  24  24  24   0   0   0   0   0   0  96  13

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updated Wed Sep 11 20:30:36 2024