8b4b_WXYZ : 3D-footprint complex

structure name	TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 19 BP OMPU PROMOTER DNA
reference	Fabrega-Ferrer et al. Proc.Natl.Acad.Sci.USA 120 e2304378120 2023
source	Vibrio cholerae
experiment	X-ray (resolution=1.75, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	8b4b_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4b_W interface=70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddsSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetve > 8b4b_X interface=63,66,67, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwrddSslTQaistlrkmlkdstkspqyvktvpkrgyqliarvetve > 8b4b_Y interface=67,68, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreddsslTQaistlrkmlkdstkspqyvktvpkrgyqliarvetve > 8b4b_Z interface=69,70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetve
interface signature	STQS/STQ/TQ/SSTQS

Estimated binding specificities ?

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# IC=7.412 IC/col=0.741 n_of_columns=10

specificity:

A |   6   0  78  24   6   6   0  78  24   0
C |   6  96   6  24   6   6   0   6  24   0
G |   6   0   6  24   6   6   0   6  24   0
T |  78   0   6  24  78  78  96   6  24  96

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updated Wed Sep 11 20:38:10 2024