8b4b_WXYZ : 3D-footprint complex

structure name	TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 19 BP OMPU PROMOTER DNA
reference	Fabrega-Ferrer et al. Proc.Natl.Acad.Sci.USA 120 e2304378120 2023
source	Vibrio cholerae
experiment	X-ray (resolution=1.75, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4b_W interface=70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddsSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetve > 8b4b_X interface=63,66,67, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwrddSslTQaistlrkmlkdstkspqyvktvpkrgyqliarvetve > 8b4b_Y interface=67,68, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreddsslTQaistlrkmlkdstkspqyvktvpkrgyqliarvetve > 8b4b_Z interface=69,70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetve
interface signature	STQS/STQ/TQ/SSTQS

Estimated binding specificities ?

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# IC=1.960 IC/col=0.103 n_of_columns=19

specificity:

A |  24  24  24  24  24  42  21  13  49  67  31  24  10  12  56  23  31  20  24
C |  24  24  24  24  24  18  23  13  15   9  23  24  10  12  14  21  21  20  24
G |  24  24  24  24  24  18  31  14  17  11  21  24  10  60  13  21  21  22  24
T |  24  24  24  24  24  18  21  56  15   9  21  24  66  12  13  31  23  34  24

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updated Sun Dec 17 19:17:08 2023