8b4d_BCD : 3D-footprint complex

structure name	TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 40 BP TOXT PROMOTER DNA
reference	Fabrega-Ferrer et al. Proc.Natl.Acad.Sci.USA 120 e2304378120 2023
source	Vibrio cholerae
experiment	X-ray (resolution=2.64, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	8b4b_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4d_B interface=68,69,71,72,75, kfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv > 8b4d_C interface=69,70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv > 8b4d_D interface=69,70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv
interface signature	SSTQS/SSTQS/SSTQS

Estimated binding specificities ?

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# IC=11.040 IC/col=0.460 n_of_columns=24

specificity:

A |   6   6  96  96  24  24  24  24  24  24  24   4   0  96  24  24  24  24  24  24  10   0  74  82
C |   4   4   0   0  24  24  24  24  24  24  24   4   0   0  24  24  24  24  24  24   4   0   4   6
G |   4   4   0   0  24  24  24  24  24  24  24   4  92   0  24  24  24  24  24  24   4   0   8   4
T |  82  82   0   0  24  24  24  24  24  24  24  84   4   0  24  24  24  24  24  24  78  96  10   4

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updated Sun Dec 15 21:56:12 2024