8b4d_BCD : 3D-footprint complex

structure name	TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 40 BP TOXT PROMOTER DNA
reference	Fabrega-Ferrer et al. Proc.Natl.Acad.Sci.USA 120 e2304378120 2023
source	Vibrio cholerae
experiment	X-ray (resolution=2.64, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4d_B interface=68,69,71,72,75, kfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv > 8b4d_C interface=69,70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv > 8b4d_D interface=69,70,72,73,76, mkfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv
interface signature	SSTQS/SSTQS/SSTQS

Estimated binding specificities ?

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# IC=3.356 IC/col=0.084 n_of_columns=40

specificity:

A |  24  24  24  24  24  24  24  31  14  49  52  30  24  24  24  24  24   3  14  56  21  24  24  24  24  24  22   3  14  56  21  24  24  24  24  24  24  24  24  24
C |  24  24  24  24  24  24  24  21  16  17  16  22  24  24  24  24  24   3  52  14  21  24  24  24  24  24  22   3  13  13  21  24  24  24  24  24  24  24  24  24
G |  24  24  24  24  24  24  24  23  14  15  14  22  24  24  24  24  24   3  16  13  23  24  24  24  24  24  22   5  13  13  23  24  24  24  24  24  24  24  24  24
T |  24  24  24  24  24  24  24  21  52  15  14  22  24  24  24  24  24  87  14  13  31  24  24  24  24  24  30  85  56  14  31  24  24  24  24  24  24  24  24  24

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updated Sun Dec 17 19:17:22 2023