8b4e_AB : 3D-footprint complex

structure name	TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 25 BP TOXT PROMOTER DNA
reference	Fabrega-Ferrer et al. Proc.Natl.Acad.Sci.USA 120 e2304378120 2023
source	Vibrio cholerae
experiment	X-ray (resolution=3.25, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	8b4b_W
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4e_A interface=68,69,71,72,75, kfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvet > 8b4e_B interface=68,69,71,72,75, kfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv
interface signature	SSTQS/SSTQS

Estimated binding specificities ?

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# IC=6.915 IC/col=0.364 n_of_columns=19

specificity:

A |   0  12  96  24  24  24  24  24  24  24  24  24  24  24  24  60   0  60  96
C |   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  12   0  12   0
G |   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  12   0  12   0
T |  96  84   0  24  24  24  24  24  24  24  24  24  24  24  24  12  96  12   0

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updated Sun Dec 15 21:56:36 2024