8b4e_AB : 3D-footprint complex

structure name	TOXR BACTERIAL TRANSCRIPTIONAL REGULATOR BOUND TO 25 BP TOXT PROMOTER DNA
reference	Fabrega-Ferrer et al. Proc.Natl.Acad.Sci.USA 120 e2304378120 2023
source	Vibrio cholerae
experiment	X-ray (resolution=3.25, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4e_A interface=68,69,71,72,75, kfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvet > 8b4e_B interface=68,69,71,72,75, kfilaekftfdplsntlidkedseeiirlgsnesrilwllaqrpnevisrndlhdfvwreqgfevddSSlTQaiStlrkmlkdstkspqyvktvpkrgyqliarvetv
interface signature	SSTQS/SSTQS

Estimated binding specificities ?

contact

# IC=1.616 IC/col=0.065 n_of_columns=25

specificity:

A |  24  24  24  24  10  17  56  21  24  24  24  24  24  24  24  24  24  24  24  33  10  45  56  24  24
C |  24  24  24  24  10  15  14  31  24  24  24  24  24  24  24  24  24  24  24  21  10  16  14  24  24
G |  24  24  24  24  10  15  13  23  24  24  24  24  24  24  24  24  24  24  24  21  10  19  13  24  24
T |  24  24  24  24  66  49  13  21  24  24  24  24  24  24  24  24  24  24  24  21  66  16  13  24  24

scan!

home
updated Sun Dec 17 19:17:45 2023