8b4h_ABC : 3D-footprint complex

Interface of input file ?

structure name	ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;Homeodomain-like;
reference complex	8b4h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4h_A interface=110,112,113,115,120,227,228,233,234,237,273, mitrgeffmikemyergmsisdiarelgidrktvrkyihspnppskskrkqrkskldpfkpylqkrmledgvfnseklffeirqqgytggktilkdymkpfretakkkyTvRYeTlpgeQmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrpyraQTkgkvERaiQyimdhfyvgtafesieelnfllhrwldqvanrkpnAttgispqerwaeeslkplplkdydtsylsyrkvhwdgsfsykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkv > 8b4h_B interface=21,30,31,32,33,35,52,92,93,95, mitrgeffmikemyergmsiSdiarelgiDRKTvRkyihspnppskskrkqRkskldpfkpylqkrmledgvfnseklffeirqqgytggkTIlKdymkpfretakkkytvryetlpgeqmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrpyraqtkgkveraiqyimdhfyvgtafesieelnfllhrwldqvanrkpnattgispqerwaeeslkplplkdydtsylsyrkvhwdgsfsykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkv > 8b4h_C interface=30,31,32,33,35,49,52,92,95,296,298,302,358, mitrgeffmikemyergmsisdiarelgiDRKTvRkyihspnppskskRkqRkskldpfkpylqkrmledgvfnseklffeirqqgytggkTilKdymkpfretakkkytvryetlpgeqmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrraiqyimdhfyvgtafesieelnfllhrwldqvanrkpnattgispqerwaeeslkplplkdydtsylsyrkvHwDgsfSykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkvisfaekikkkQtema
interface signature	TRYTQQTERQA/SDRKTRRTIK/DRKTRRRTKHDSQ

Estimated binding specificities ?

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# IC=32.093 IC/col=0.642 n_of_columns=50

specificity:

A |   0   0   0   0  96  24   4   0   4   0   0  24  24  24  24  24  24  24  24  24   0   0   0  24   0  96  24  24  24  24   4   8  24   4   0  24  24  24   0  96  24  24  24  24   8   0   0   0   4  96
C |   0   0   0  96   0  24   4   0  84  96   0  24  24  24  24  24  24  24  24  24   0  96  96  24  96   0  24  24  24  24  84   8  24  84   0  24  24  24   0   0  24  24  24  24   8  96  96  96  84   0
G |   0  96   0   0   0  24  84  96   4   0  96  24  24  24  24  24  24  24  24  24   0   0   0  24   0   0  24  24  24  24   4  76  24   4  96  24  24  24   0   0  24  24  24  24   8   0   0   0   4   0
T |  96   0  96   0   0  24   4   0   4   0   0  24  24  24  24  24  24  24  24  24  96   0   0  24   0   0  24  24  24  24   4   4  24   4   0  24  24  24  96   0  24  24  24  24  72   0   0   0   4   0

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updated Wed Sep 11 20:39:00 2024