8b4h_ABC : 3D-footprint complex

Interface of input file ?

structure name	ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;Homeodomain-like;
reference complex	8b4h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4h_A interface=110,112,113,115,120,227,228,233,234,237,273, mitrgeffmikemyergmsisdiarelgidrktvrkyihspnppskskrkqrkskldpfkpylqkrmledgvfnseklffeirqqgytggktilkdymkpfretakkkyTvRYeTlpgeQmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrpyraQTkgkvERaiQyimdhfyvgtafesieelnfllhrwldqvanrkpnAttgispqerwaeeslkplplkdydtsylsyrkvhwdgsfsykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkv > 8b4h_B interface=21,30,31,32,33,35,52,92,93,95, mitrgeffmikemyergmsiSdiarelgiDRKTvRkyihspnppskskrkqRkskldpfkpylqkrmledgvfnseklffeirqqgytggkTIlKdymkpfretakkkytvryetlpgeqmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrpyraqtkgkveraiqyimdhfyvgtafesieelnfllhrwldqvanrkpnattgispqerwaeeslkplplkdydtsylsyrkvhwdgsfsykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkv > 8b4h_C interface=30,31,32,33,35,49,52,92,95,296,298,302,358, mitrgeffmikemyergmsisdiarelgiDRKTvRkyihspnppskskRkqRkskldpfkpylqkrmledgvfnseklffeirqqgytggkTilKdymkpfretakkkytvryetlpgeqmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrraiqyimdhfyvgtafesieelnfllhrwldqvanrkpnattgispqerwaeeslkplplkdydtsylsyrkvHwDgsfSykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkvisfaekikkkQtema
interface signature	TRYTQQTERQA/SDRKTRRTIK/DRKTRRRTKHDSQ

Estimated binding specificities ?

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# IC=33.953 IC/col=0.679 n_of_columns=50

specificity:

A |   0   4   0   0   0  66  24  24  24  24   0  96  24  24  24   0   0  24  10   2  24  24  24  24   0   0   9   0   0  96  24  24  24  24  24  24  24  24  24   0   0   2   0   4   7   0   0  96   0  96
C |   0   2   0   0   0  10  24  24  24  24   0   0  24  24  24  96   3  24  70   2  24  24  24  24   0   0   7   0   0   0  24  24  24  24  24  24  24  24  24  96   0   4  96  88   7   0   0   0  96   0
G |   0  88  96  96  96  10  24  24  24  24   0   0  24  24  24   0  93  24   5  90  24  24  24  24   0  96  75  96  96   0  24  24  24  24  24  24  24  24  24   0  96  88   0   2  10   0  96   0   0   0
T |  96   2   0   0   0  10  24  24  24  24  96   0  24  24  24   0   0  24  11   2  24  24  24  24  96   0   5   0   0   0  24  24  24  24  24  24  24  24  24   0   0   2   0   2  72  96   0   0   0   0

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updated Sun Dec 15 21:56:48 2024