8b4h_A : 3D-footprint complex

Interface of input file ?

structure name	ISTA TRANSPOSASE CLEAVED DONOR COMPLEX
experiment	NMR
structural superfamily	Ribonuclease H-like;Homeodomain-like;
sequence family	Integrase core domain;
multimeric complexes	8b4h_ABC 8q4d_EKM 8q4d_FI 8q4d_HJLN 8q4d_OUW 8q4d_PS 8q4d_RTVX
redundant complexes	8q4d_K
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8b4h_A interface=110,112,113,115,120,227,228,233,234,237,273, mitrgeffmikemyergmsisdiarelgidrktvrkyihspnppskskrkqrkskldpfkpylqkrmledgvfnseklffeirqqgytggktilkdymkpfretakkkyTvRYeTlpgeQmqvdwkevgevviegkkvklslfvatlgysrmkyavfttsqdqehlmecliqsfkyfggvpkkvlfdnmktvtdgreqgvvkwnqrfsefasyygfipkvcrpyraQTkgkvERaiQyimdhfyvgtafesieelnfllhrwldqvanrkpnAttgispqerwaeeslkplplkdydtsylsyrkvhwdgsfsykgeqwllsaeyagkeilvkerlngdirlyfrgeeishvdqqkkv
interface signature	TRYTQQTERQA

Estimated binding specificities ?

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# IC=5.245 IC/col=1.049 n_of_columns=5

specificity:

A |   0   0   2   0  52
C |   0   0   2  96  14
G |   0  96   2   0  16
T |  96   0  90   0  14

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Dendrogram of similar interfaces ?

matrix format

  
  ----------HGDTQGECSCKTET       +-----------------------------8w34_A    
                                 ! 
  QTVAQTNA----------------   L --3                            +8osb_E    
                                 !                        +---1 
  --IAQCNAMG--------------   L   +------------------------2   +1b72_A    
                                                          ! 
  --IAQCNAYC--------------   L                            +----3rkq_B

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updated Sat Sep 14 08:40:46 2024