8c5u_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF YEAST MITOCHONDRIAL RNA POLYMERASE TRANSCRIPTION INITIATION COMPLEX WITH 8-MER RNA, PPPGPGPUPAPAPAPUPG (IC8)
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8c5u_A interface=135,142,144,148,171,217,219,221,222,375,379,404,408,599,601,602,603,604,706,715,716,717,728,740, inffeiynslptleekkafesalnifnqdrqkvlenrateaarerwkhdfeeakargdisieknlnvklwkwynemlplvkeeinhcrsllseklsdkkglnkvdtnrlgygpyltlidpgkmcvitilellklNstgegmRtAravIsvgkaiemefrseqvlkkilwpQsirarigsvlismliqvakvsvqgvdpvtkakvhgeapafahgyqYhNgSKlgvlkihktlirqlngerliasvqpqllpmlvepkpwvnwrsggyhytqstllrtkdspeqvaylkaasdngdidrvydglnvlgrtpwtvnrkvfdvvsqvwnkgegfldipgaqdemvlppappknsdpsilrawklqvktiankfssdrSnrcDtnykleiaraflgeklyfphnldfRgraYplsphfnhlgndmsrgllifwhgkklgpsglkwlkihlsnlfgfdklplkdrvafteshlqdikdsaenpltgdrwwttadkpwqalatcfelnevmkmdnpeefishqpvhqdgtcnglqhyaalggdvegatqvnlvpsdkpqdvyahvarlvqkrleiaaekgdenakilkdkitrkvvkqtvmtnvYgVTYVgatfqiakqlspifddrkesldfskyltkhvfsairelfhsahliqdwlgesakrisksirldvdeksfkngnkpdfmssviwttplglpivqpyreeskkQvetnlqtvFISdpfavnpvnaRrqkaglppnfiHsldashmllsaaecgkqgldfasvhdsywthasdidtmnvvlreqfiklhevdlvlrlkeefdqryknyvkigklkrstdlaqkiirirkdlsrklgrsttladeiyfekkrqellnspliedrnvgekmvttvslfeditdldalegmsvllplrlpeippkgdfdvtvlrnsqyffs > 8c5u_B interface=17,77,100,102,103,104,142,143,145,147,148, svpipgikdisklkffYgfkylwnptvynkifdkldltktykhpeelkvldlypgvgiqsaifynkycprqyslleKrsslykflnakfegsplqilkrDpYDWstysnlideerifvpevqssdhindkfltvanvtgegSEgLiMQwlscignknwlyrfgkvkmllwmpsttarkllarpgmhsrskcsvvreaftdtkliaisdanelkgfdsqcieewdpilfsaaeiwptkgkpialvemdpidfdfdvdnwdyvtrhlmilkrtplntvmdslghggqqyfnsritdkdllkkcpidltndefiyltklfmewpfkpdilmd
interface signature	NRAIQYNSKSDRYYVTYVQFISRH/YKDYDWSELMQ

Estimated binding specificities ?

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# IC=10.498 IC/col=0.328 n_of_columns=32

specificity:

A |  24  24  24  24  24  24  24  24  24  10  96   0  96  96   0  24  96  31  15  27  24  24  21  10   0  52  33  24  24  24  24  24
C |  24  24  24  24  24  24  24  24  24  10   0   0   0   0   0  24   0  21  17  22  24  24  23  10  96  14  21  24  24  24  24  24
G |  24  24  24  24  24  24  24  24  24  10   0   0   0   0  96  24   0  23  15  22  24  24  21  63   0  16  21  24  24  24  24  24
T |  24  24  24  24  24  24  24  24  24  66   0  96   0   0   0  24   0  21  49  25  24  24  31  13   0  14  21  24  24  24  24  24

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updated Sun Dec 17 20:07:51 2023