8c7s_AB : 3D-footprint complex

structure name	TRANSCRIPTIONAL PLEIOTROPIC REPRESSOR CODY FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ILE, GTP, AND A 30-BP DNA FRAGMENT ENCOMPASSING TWO OVERLAPPING BINDING SITES
reference	Sauer-Eriksson et al. 'Nucleic 51 7631 2023
source	Staphylococcus aureus (strain USA300) / Staphylococcus aureus (strain USA300) / Staphylococcus aureus (strain USA300) / Staphylococcus aureus (strain USA300)
experiment	X-ray (resolution=3.05, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	8c7s_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8c7s_A interface=214,215,218,237, msllsktrelntllqkhkgiavdfkdvaqtissvtvtnvfivsrrgkilgsslnellksqriiqmleerhipseyterlmevkqtesnididnvltvfppenrelfidsrttifpilgggerlgtlvlgrvhddfnendlvlgeyaatvigmeilrekhsevekeardkaaitmainslsysekeaiehifeelggteglliaskvadrvgitRSviVnalrklesagviesrslgMkgtfikvkkekfldeleks > 8c7s_B interface=213,215,216,237, msllsktrelntllqkhkgiavdfkdvaqtissvtvtnvfivsrrgkilgsslnellksqriiqmleerhipseyterlmevkqtesnididnvltvfppenrelfidsrttifpilgggerlgtlvlgrvhddfnendlvlgeyaatvigmeilrekhsevekeardkaaitmainslsysekeaiehifeelggteglliaskvadrvgiTrSVivnalrklesagviesrslgMkgtfikvkkekfldeleks
interface signature	RSVM/TSVM

Estimated binding specificities ?

contact

# IC=7.842 IC/col=0.490 n_of_columns=16

specificity:

A |  65  88  24  24   3   0   9   6   0  24  24  24  24  24   7  63
C |   3   3  24  24   3   0  84   3   0  24  24  24  24  24  15  11
G |  21   0  24  24   6   0   0   3  96  24  24  24  24  24   0  15
T |   7   5  24  24  84  96   3  84   0  24  24  24  24  24  74   7

scan!

home
updated Sat Jun 27 05:47:24 2026