| structure name | TRANSCRIPTIONAL PLEIOTROPIC REPRESSOR CODY FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH ILE, GTP, AND A 30-BP DNA FRAGMENT ENCOMPASSING TWO OVERLAPPING BINDING SITES (Global transcriptional regulator CodY Fragment) |
| reference | Sauer-Eriksson et al. 'Nucleic 51 7631 2023 |
| source | Staphylococcus aureus (strain USA300) / Staphylococcus aureus (strain USA300) |
| experiment | X-ray (resolution=3.05, R-factor=?) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | CodY GAFlike domain; CodY helixturnhelix domain; |
| multimeric complexes | 8c7s_AB |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RSVM |
Estimated binding specificities ?
| contact |  |
A | 24 24 24 24 24 24 24 24 24 24 24 24 38 45 24 24 16 7 19 24 24 24 24 24 24 24 24 24 24 24 C | 24 24 24 24 24 24 24 24 24 24 24 24 19 16 24 24 19 7 39 24 24 24 24 24 24 24 24 24 24 24 G | 24 24 24 24 24 24 24 24 24 24 24 24 19 19 24 24 16 7 19 24 24 24 24 24 24 24 24 24 24 24 T | 24 24 24 24 24 24 24 24 24 24 24 24 20 16 24 24 45 75 19 24 24 24 24 24 24 24 24 24 24 24scan! |
Dendrogram of similar interfaces ?
matrix format--------YG----------TG--RGSG--FT-- L +-----------------------------2h27_A +-1 NTATATRG-------------------------- L +-2 +-----------------------------5t01_B ! ! ----------SGQG--YCNC-------------- +-3 +-----------------------------2ve9_C ! ! --------------ITRGECSC--SGKG------ L --4 +-----------------------------5i2d_R ! ----------------RGTC--DCVA--RGRCRC L +-----------------------------8hih_Q |
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updated Wed Dec 20 01:49:35 2023