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legend  pdf

structure nameTRANSCRIPTIONAL PLEIOTROPIC REPRESSOR CODY FROM ENTEROCOCCUS FAECALIS IN COMPLEX WITH LEU AND A 30-BP DNA FRAGMENT ENCOMPASSING TWO OVERLAPPING BINDING SITES
(GTP-sensing transcriptional pleiotropic repressor CodY)
referenceSauer-Eriksson et al. 'Nucleic 51 7631 2023
sourceEnterococcus faecalis (strain ATCC 700802 / V583) / Enterococcus faecalis (strain ATCC 700802 / V583)
experimentX-ray (resolution=3.15, R-factor=0.250)
structural superfamily"Winged helix" DNA-binding domain;GAF domain-like;
sequence familyCodY GAFlike domain; CodY helixturnhelix domain;
multimeric complexes8c7u_ABCD
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSTRSVVM

Estimated binding specificities ?

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# IC=7.199 IC/col=0.800 n_of_columns=9 specificity:   
A |   0   0  86  82  77  24  13   4   4
C |   0   0   6   9  11  24  11   4  82
G |   0  96   0   4   4  24   4   6   4
T |  96   0   4   1   4  24  68  82   6
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Sat Sep 14 09:20:24 2024