8cef_CDJ : 3D-footprint complex

structure name	ASYMMETRIC DIMERIZATION IN A TRANSCRIPTION FACTOR SUPERFAMILY IS PROMOTED BY ALLOSTERIC INTERACTIONS WITH DNA
reference	Billas et al. 'Nucleic 51 8864 2023
source	Mus musculus
experiment	X-ray (resolution=2.49, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	8cef_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8cef_C interface=24,27,28,31,32,82,85, lpkrlclvcgdvasgyhygvascEacKAffKRtiqgsieyscpasneceitkrrrkacqacrftkclrvgmlkegvrldrvRggR > 8cef_D interface=23,26,27,30,31,81,84, pkrlclvcgdvasgyhygvascEacKAffKRtiqgsieyscpasneceitkrrrkacqacrftkclrvgmlkegvrldrvRggR > 8cef_J interface=23,26,27,30,31,84, pkrlclvcgdvasgyhygvascEacKAffKRtiqgsieyscpasneceitkrrrkacqacrftkclrvgmlkegvrldrvrggRqkyk
interface signature	EKAKRRR/EKAKRRR/EKAKRR

Estimated binding specificities ?

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# IC=16.067 IC/col=1.071 n_of_columns=15

specificity:

A |  75   0   0   8   0  96   0   0  14   4   0  16   0   0   0
C |   8   0   0  12  96   0  96  96   8   5   0   6  96  96   0
G |   8  96  96  10   0   0   0   0  62   4  96  70   0   0   0
T |   5   0   0  66   0   0   0   0  12  83   0   4   0   0  96

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updated Sun Dec 15 22:55:14 2024