8cef_CDJ : 3D-footprint complex

structure name	ASYMMETRIC DIMERIZATION IN A TRANSCRIPTION FACTOR SUPERFAMILY IS PROMOTED BY ALLOSTERIC INTERACTIONS WITH DNA
reference	Billas et al. 'Nucleic 51 8864 2023
source	Mus musculus
experiment	X-ray (resolution=2.49, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	8cef_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8cef_C interface=24,27,28,31,32,82,85, lpkrlclvcgdvasgyhygvascEacKAffKRtiqgsieyscpasneceitkrrrkacqacrftkclrvgmlkegvrldrvRggR > 8cef_D interface=23,26,27,30,31,81,84, pkrlclvcgdvasgyhygvascEacKAffKRtiqgsieyscpasneceitkrrrkacqacrftkclrvgmlkegvrldrvRggR > 8cef_J interface=23,26,27,30,31,84, pkrlclvcgdvasgyhygvascEacKAffKRtiqgsieyscpasneceitkrrrkacqacrftkclrvgmlkegvrldrvrggRqkyk
interface signature	EKAKRRR/EKAKRRR/EKAKRR

Estimated binding specificities ?

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# IC=15.880 IC/col=1.059 n_of_columns=15

specificity:

A |  73   0   0  13   0  96   0   0  13   6   0  24   0   0   0
C |   9   0   0  13  96   0  96  96   9   4   0   4  96  96   0
G |   4  96  96   6   0   0   0   0  59   4  96  64   0   0   0
T |  10   0   0  64   0   0   0   0  15  82   0   4   0   0  96

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updated Wed Sep 11 21:32:37 2024