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structure nameASYMMETRIC DIMERIZATION IN A TRANSCRIPTION FACTOR SUPERFAMILY IS PROMOTED BY ALLOSTERIC INTERACTIONS WITH DNA
(Nuclear receptor DNA binding domain)
referenceBillas et al. 'Nucleic 51 8864 2023
sourceMus musculus
experimentX-ray (resolution=2.49, R-factor=0.216)
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains;
multimeric complexes8cef_CDJ 8cef_GHK
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKAKRRR

Estimated binding specificities ?

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# IC=8.431 IC/col=0.937 n_of_columns=9 specificity:   
A |   0  13  24  96   0   0  16   0  96
C |   0  54  24   0   0   0  13  96   0
G |   0  16  24   0  96  96  13   0   0
T |  96  13  24   0   0   0  54   0   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  --ECKG----RA----PA--RC   L                     +5krb_G    
                                             +---1 
  CAECKG--KGRG----RTRT--   L        +--------3   +1cit_A    
                                    !        ! 
  ----KGVT--RG----------   L     +--4        +---2c7a_B    
                                 !  ! 
  --ECKGAG--RG----------   L   +-5  +------------4ond_A    
                               ! ! 
  --EAKG--RTRT--RT------       ! !               +4umm_E    
                             --6 +---------------2 
  --EAKG--KTRG----------   L   !                 +4umm_A    
                               ! 
  --ECKGAG--KTRG--------   L   +----------------4aa6_B    
                             

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updated Sat Jan 10 22:43:33 2026