8d0k_ABCDEF : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Sun Dec 15 23:14:43 2024

structure name	HUMAN CST-DNA POLYMERASE ALPHA/PRIMASE PREINITIATION COMPLEX BOUND TO 4XTEL-FOLDBACK TEMPLATE - PRIM2C ADVANCED PIC
source	HOMO SAPIENS
experiment	NMR
structural superfamily	"Winged helix" DNA-binding domain;Nucleic acid-binding proteins;Prim-pol domain;PriB N-terminal domain-like;Ribonuclease H-like;DNA/RNA polymerases;Zinc finger domain of DNA polymerase-alpha;
reference complex	8d0b_A 8d0b_B 8d0k_C 8d0k_D 8d0k_E 8d0k_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8d0k_A interface=849,851,872,874,898,902,904,906,910,958,959,997,999,1006,1008,1047,1074,1076,1079,1087,1089,1091,1105,1107, psseqawledaqvfiqktlcpavkepnvqltplvidcvktvwlsqgrnqgstlplsysfvsvqdlkthqrlpccshlswsssayqawaqeagpngnplpreqllllgtltdlsadleqecrngslyvrdntgvlscelidldlswlghlflfprwsylpparwnssgeghlelwdapvpvfpltispgpvtpipvlypesascllrlrnklrgvqrnlagslvrlsalvkskqkayfilslgrshpavthvsiivqvpaqlvwhralrpgtayvltelrvskirgqrqhvwmtsqssrllllkpecvqevrysrllsysgavtgvlnepaglyeldgqlglclayqqfrglrrvmrpgvclqlqdvhllqsvgggtrrpvlapclrgavllqsfsrqkpgahssrqaygaslyeqlvwerqlglplylwatkaleelacklcphvlrhhqflqhsspgspslglqllaptldllappgspvrnahneileephhcplqkytrlqtpssfptlatlkeegqrkawasfdpkallplpeasylpscqlnrrlawswlcllpsafcpaqvllgvlvasshkgclqlrdqsgslpclllakhsqplsdprligclvraerfqliverdvrssfpswkelsmpgfiqkqqarvyvqffladalilpvprpgqsrlfllchkealmkrnfcvppgaspevpkpalsfyvlgswlggtqrkegtgwglpepqgnddndqkvhliffgssvrwfeflhpgqvyrlvapgpatpmlfekdgsscisrrplelagcascltvqdnwtlelessqdiqdvldankslpessltdllsdnftdslvsfsaeilsrtlcepRrCvkltvaletaecefpphldvYiEdphlppslgllpgarvhfsqlekRvsrShNvYccfRsstyvqvlsfppettisvplphiylaellqggqspfqataschivsvFSlqlfwvcayctsicrqgkctrlgstcptqtaisqaiiRlLvedgtaEaVvtcrnhhvaaalglcprewaslldfvqvpgrvvlqfagPepmtmflwtlctspsvlrpivlsfelErKpsKivpleppRlQrFqcgelpflthvnpRlRlsclsires > 8d0k_B interface=18,61,63,66,83,85,135, rceeetpsllwgldpvfLafaklyirdildmkesrqvpgvflynghpikqvdvlgtvigvReRdaFysygvddstgvincicWkKlntesvsaapsaarelsltsqlkklqetieqktkieigdtirvrgsirtYreereihattyykvddpvwniqiarmlelptiyrkvydqpfhssalekeealsnpgaldlpsltsllsekakeflmenrvqsfyqqelemvesllslanqpvihsassdqvnfkkdttskaihsifknaiqllqekglvfqkddgfdnlyyvtredkdlhrkihriiqqdcqkpnhmekgchflhilacarlsirpglseavlqqvlelledqsdivstmehyytaf > 8d0k_C interface= lpkpgtyylpwevsagqVpdgstlrtfgrlclydmiqsrvtlmaqhgsdqhqvlvctklvEpFhaQvgslyivlgelqhqqdRgSvvkarvltcvegmnlplleqaireqrlykqerggsq > 8d0k_D interface=52,53,55, etfdptelpellklyyrrlfpysqyyrwlnyggviknyfqhrefsftlkddIYiRyqsfnnqsdlekemqkmnpykidigavyshrpnqhntvklgafqaqekelvfdidmtdyddvrrccssadicpkcwtlmtmairiidralkedfgfkhrlwvysgrrgvhcwvcdesvrklssavrsgiveylslvkggqdvkkkvhlsekihpfirksiniikkyfeeyalvnqdilenkeswdkilalvpetihdelqqsfqkshnslqrwehlkkvasryqnnikndkygpwleweimlqycfprldinvskginhllkspfsvhpktgrisvpidlqkvdqfdpftvptisficreldaistneeekeeneaesdvkhrtrdykktslapyvkvfehflenldksrkgellkksdlqkdf > 8d0k_E interface=283,323,326,327,332, dqrnasyphclqfylqppsenisliefenlaidrvkllksvenlgvsyvkgteqyqskleselrklkfsyrenledeyeprrrdhishfilrlaycqseelrrwfiqqemdllrfrfsilpkdkiqdflkdsqlqfeaisdeektlreqeivasspslsglklgfesiykipfadaldlfrgrkvyledgfayvplkdivaiilnefraklskalaltarslpavqsderlqpllnhlshsgnvgkisldqidllstksfppcmrqlhkalrenhhlrhggrMqyglflkgigltleqalqfwkqefikgkmdpdkfdkgysYniRHsfgkEgkrtdytpfsclkiilsnppsqgdyhgcpfrhsdpellkqklqsykispggisqildlvkgthyqvacqkyfemihnvddcgfslnhpnqffcesqril > 8d0k_F interface=231,330,332,349, vdsshlplvkgadeeqvfhfywldayedqynqpgvvflfgkvwiesaethvsccvmvkniertlyflpremkidlntgketgtpismkdvyeefdekiatkykimkfkskpveknyafeipdvpekseylevkysaempqlpqdlkgetfshvfgtntsslelflmnrkikgpcwlevkspqllnqpvswckveamalkpdlvnvikdvsppplvvmafsmktmqnaknhQneiiamaalvhhsfaldkaapkppfqshfcvvskpkdcifpyafkeviekknvkvevaatertllgfflakvhkidpdiivghniygfelevllqrinVcKaphwskigrlkrsnmpKlggrsgfgernatcgrmicdveisakelircksyhlselvqqilktervvipmeniqnmysessqllyllehtwkdakfilqimcelnvlplalqitniagnimsrtlmggrserneflllhafyennyivpdkqglvldpkvgfydkfillldfnslypsiiqefnicfttvqrvaseaqkvtedgeqeqipelpdpslemgilpreirklverrkqvkqlmkqqdlnpdlilqydirqkalkltansmygclgfsysrfyakplaalvtykgreilmhtkemvqkmnleviygdtdsimintnstnleevfklgnkvksevnklyklleididgvfksllllkkkkyaalvveptsdgnyvtkqelkqltdeekyrdcerfkcpcptcgteniydnvfdgsgtdmepslyrcsnidckaspltftvqlsnklimdirrfikkyydgwliceeptcrnrtrhlplqfsrtgplcpacmkatlqpeysdkslytqlcfyryifdaecaleklttdhekdklkkqfftpkvlqdyrklkntaeqflsrsgysevnlsklfagcavks