8df7_AB : 3D-footprint complex

structure name	STRUCTURE OF M. KANDLERI TOPOISOMERASE V IN COMPLEX WITH DNA. 38 BASE PAIR SYMMETRIC DNA COMPLEX
reference	Mondragon et al. Elife 11 ? 2022
source	Methanopyrus kandleri
experiment	X-ray (resolution=3.52, R-factor=?)
structural superfamily	Topoisomerase V catalytic domain-like;RuvA domain 2-like;
reference complex	8df8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8df7_A interface=132,199,286,287, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravKrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphDeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimrRYleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgyktlrdagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag > 8df7_B interface=286,751,752,755, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimrRyleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgyKTlrDagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag
interface signature	KDRY/RKTD

Estimated binding specificities ?

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# IC=8.878 IC/col=0.277 n_of_columns=32

specificity:

A |   0   0  10  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  16  24  10  24  24  24   0   0   0  60  24  24  87
C |  96   0  10  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  24  12  24  24  24   0   0  96  13  24  24   3
G |   0   0  66  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  13  24  13  24  24  24   0  96   0  10  24  24   3
T |   0  96  10  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54  24  61  24  24  24  96   0   0  13  24  24   3

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updated Sun Dec 15 23:22:15 2024