8df8_AB : 3D-footprint complex

structure name	STRUCTURE OF M. KANDLERI TOPOISOMERASE V IN COMPLEX WITH DNA. 40 BASE PAIR SYMMETRIC DNA COMPLEX
reference	Mondragon et al. Elife 11 ? 2022
source	Methanopyrus kandleri
experiment	X-ray (resolution=2.92, R-factor=?)
structural superfamily	Topoisomerase V catalytic domain-like;RuvA domain 2-like;
reference complex	8df8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8df8_A interface=286,287,751,752, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimrRYleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgyKTlrdagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag > 8df8_B interface=286,752,755, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimrRyleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgykTlrDagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag
interface signature	RYKT/RTD

Estimated binding specificities ?

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# IC=8.320 IC/col=0.260 n_of_columns=32

specificity:

A |   2  24   0  84  24  24  24  24  24  16  24  24  24  24  24  24  24  24  24  24  24  19  24  24  24  24  24  24   0   0   1  87
C |   5  24  96   5  24  24  24  24  24  14  24  24  24  24  24  24  24  24  24  24  24  14  24  24  24  24  24  24   0   0  93   2
G |   2  24   0   2  24  24  24  24  24  17  24  24  24  24  24  24  24  24  24  24  24  11  24  24  24  24  24  24   0  96   0   5
T |  87  24   0   5  24  24  24  24  24  49  24  24  24  24  24  24  24  24  24  24  24  52  24  24  24  24  24  24  96   0   2   2

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updated Sun Dec 15 23:24:22 2024