8dfb_AB : 3D-footprint complex

structure name	STRUCTURE OF M. KANDLERI TOPOISOMERASE V IN COMPLEX WITH DNA. 39 BASE PAIR SYMMETRIC DNA COMPLEX
reference	Mondragon et al. Elife 11 ? 2022
source	Methanopyrus kandleri
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	Topoisomerase V catalytic domain-like;RuvA domain 2-like;
reference complex	8df8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8dfb_A interface=132,133,197,199,286,287,752,755, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravKRnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtPhDeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimrRYleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgykTlrDagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag > 8dfb_B interface=285,286,287,752,755, lvydaefvgserefeeeretflkgvkaydgvlatrylmersssakndeellelhqnfilltgsyacsidptedryqnvivrgvnfdervqrlstggsparyaivyrrgwraiakaldideedvpaievravkrnplqpalyrilvrygrvdlmpvtvdevppemageferlierydvpidekeerileilrenpwtphdeiarrlglsvsevegekdpessgiyslwsrvvvnieydertakrhvkrrdrlleelyehleelserylrhpltrrwivehkrdimRRYleqrivecalklqdrygiredvalclarafdgsismiattpyrtlkdvcpdltleeaksvnrtlatlidehglspdaadeliehfesiagilatdleeiermyeegrlseeayraaveiqlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkglktlesivgdlekadelkrkygsasavrrlpveelrelgfsddeiaeikgipkklreafdletaaelyerygslkeigrrlsyddllelgatpkaaaeikgpefkfllniegvgpklaerileavdydlerlaslnpeelaekveglgeelaervvyaarervesrrksgrqerseeewkewlerkvgegrarrlieyfgsagevgklvenaevskllevpgigdeavarlvpgykTlrDagltpaeaervlkrygsvskvqegatpdelrelglgdakiarilglrslvnarldvdtayelarrygsvsavraapvaelrelglsdraiariag
interface signature	KRPDRYTD/RRYTD

Estimated binding specificities ?

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# IC=13.845 IC/col=0.407 n_of_columns=34

specificity:

A |   0   4   0   7  24  53   0   9  24  24   2  96  24  24  24  24  24  24  24  24  24   2  24  24  24  24  24  24   6   0  96  24  24  96
C |  96  56   0   9  24   7  96   7  24  24   6   0  24  24  24  24  24  24  24  24  24   1  24  24  24  24  24  24   0   7   0  24  24   0
G |   0  32   0  71  24  24   0  73  24  24   2   0  24  24  24  24  24  24  24  24  24   2  24  24  24  24  24  24  88  88   0  24  24   0
T |   0   4  96   9  24  12   0   7  24  24  86   0  24  24  24  24  24  24  24  24  24  91  24  24  24  24  24  24   2   1   0  24  24   0

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updated Fri Aug 1 06:03:30 2025