8edg_CGK : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO LEFT-ENDS OF ITS DNA TRANSPOSON
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8edg_C interface=60,61,62,63,64,67,107,316, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttRQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfSavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrWnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniitekrnrigqqtvdsllflnsfyknfck > 8edg_G interface=61,62,63,64,67,315,517, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttrQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptRwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfSlagniitekrnrigqqtvdsllflnsfyknfck > 8edg_K interface=61,62,63,64,67, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttrQTSNlcRhkccasl
interface signature	RQTSNRSW/QTSNRRS/QTSNR

Estimated binding specificities ?

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# IC=9.177 IC/col=0.219 n_of_columns=42

specificity:

A |  56  22  24  24  24  24  24  24  24  24  24  24  24  96  78  13  22  16  12   0   1  24  24  24  24  24  24  24  14  78   0   0  33  24  24  24  24  24  24  22  24  15
C |  13  22  24  24  24  24  24  24  24  24  24  24  24   0   6  14  22  19  12  96   1  24  24  24  24  24  24  24  14   6  96   0  21  24  24  24  24  24  24  30  24  17
G |  13  30  24  24  24  24  24  24  24  24  24  24  24   0   6  56  22  45  60   0   1  24  24  24  24  24  24  24  16   6   0   0  21  24  24  24  24  24  24  22  24  15
T |  14  22  24  24  24  24  24  24  24  24  24  24  24   0   6  13  30  16  12   0  93  24  24  24  24  24  24  24  52   6   0  96  21  24  24  24  24  24  24  22  24  49

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updated Sun Dec 17 21:40:15 2023