8edg_CGK : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO LEFT-ENDS OF ITS DNA TRANSPOSON
experiment	NMR
structural superfamily	Ribonuclease H-like;Hermes dimerisation domain;beta-beta-alpha zinc fingers;
reference complex	8edg_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8edg_C interface=60,61,62,63,64,67,107,316, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttRQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfSavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrWnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniitekrnrigqqtvdsllflnsfyknfck > 8edg_G interface=61,62,63,64,67,315,517, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttrQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptRwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfSlagniitekrnrigqqtvdsllflnsfyknfck > 8edg_K interface=61,62,63,64,67, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttrQTSNlcRhkccasl
interface signature	RQTSNRSW/QTSNRRS/QTSNR

Estimated binding specificities ?

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# IC=16.242 IC/col=0.387 n_of_columns=42

specificity:

A |  96  24  24  24  24  24  24  24  24  24  24  24  24  96  96   0  24  12   0   0   0  24  24  24  24  24  24  24   0  96   0   0  60  24  24  24  24  24  24  24  24   0
C |   0  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  24  12   0  96   0  24  24  24  24  24  24  24   0   0  96   0  12  24  24  24  24  24  24  24  24  12
G |   0  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96  24  60  96   0   0  24  24  24  24  24  24  24   0   0   0   0  12  24  24  24  24  24  24  24  24   0
T |   0  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  24  12   0   0  96  24  24  24  24  24  24  24  96   0   0  96  12  24  24  24  24  24  24  24  24  84

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updated Fri Aug 1 07:13:34 2025