8edg_CGK : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO LEFT-ENDS OF ITS DNA TRANSPOSON
experiment	NMR
structural superfamily	Ribonuclease H-like;Hermes dimerisation domain;beta-beta-alpha zinc fingers;
reference complex	8edg_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8edg_C interface=60,61,62,63,64,67,107,316, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttRQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfSavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrWnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniitekrnrigqqtvdsllflnsfyknfck > 8edg_G interface=61,62,63,64,67,315,517, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttrQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfsavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptRwnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfSlagniitekrnrigqqtvdsllflnsfyknfck > 8edg_K interface=61,62,63,64,67, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttrQTSNlcRhkccasl
interface signature	RQTSNRSW/QTSNRRS/QTSNR

Estimated binding specificities ?

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# IC=14.075 IC/col=0.335 n_of_columns=42

specificity:

A |   6  24  24  24  24  24  24  24  24  24  96   0   0  78  24  24  24  24  24  24  24  96   0   0   6  24   6   0   0  24  24  24  24  24  24  24  24  24  24  24  24   6
C |  78  24  24  24  24  24  24  24  24  24   0   0   0   6  24  24  24  24  24  24  24   0   0  96  78  24  78   0   0  24  24  24  24  24  24  24  24  24  24  24  24   6
G |   6  24  24  24  24  24  24  24  24  24   0  96   0   6  24  24  24  24  24  24  24   0  96   0   6  24   6   0   0  24  24  24  24  24  24  24  24  24  24  24  24   6
T |   6  24  24  24  24  24  24  24  24  24   0   0  96   6  24  24  24  24  24  24  24   0   0   0   6  24   6  96  96  24  24  24  24  24  24  24  24  24  24  24  24  78

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updated Wed Jan 7 22:03:01 2026