8edg_C : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO LEFT-ENDS OF ITS DNA TRANSPOSON
experiment	NMR
structural superfamily	Ribonuclease H-like;Hermes dimerisation domain;beta-beta-alpha zinc fingers;
sequence family	Hermes transposase DNAbinding domain; hAT family dimerisation domain; BED zinc finger;
multimeric complexes	8edg_CGK 8sjd_AC 8sjd_BD
redundant complexes	4d1q_H 8sjd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8edg_C interface=60,61,62,63,64,67,107,316, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttRQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfSavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrWnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniitekrnrigqqtvdsllflnsfyknfck
interface signature	RQTSNRSW

Estimated binding specificities ?

contact

# IC=3.764 IC/col=0.090 n_of_columns=42

specificity:

A |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  14  78   0   0  31  24  24  24  24  24  24  22  24  15
C |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  14   6  96   0  21  24  24  24  24  24  24  30  24  15
G |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  14   6   0   0  23  24  24  24  24  24  24  22  24  15
T |  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  54   6   0  96  21  24  24  24  24  24  24  22  24  51

scan!

home
updated Wed Dec 20 02:21:10 2023