8edg_C : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE HERMES TRANSPOSASE BOUND TO TWO LEFT-ENDS OF ITS DNA TRANSPOSON
experiment	NMR
structural superfamily	Ribonuclease H-like;Hermes dimerisation domain;beta-beta-alpha zinc fingers;
sequence family	Hermes transposase DNAbinding domain; hAT family dimerisation domain; BED zinc finger;
multimeric complexes	8edg_CGK 8sjd_AC 8sjd_BD
redundant complexes	8sjd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8edg_C interface=60,61,62,63,64,67,107,316, mdnlevkakinqglykitprhkgtsfiwnvladiqkeddtlvegwvfcrkcekvlkyttRQTSNlcRhkccaslkqsrelktvsadckkeaiekcaqwvvrdcrpfSavsgsgfidmikffikvgaeygehvnveellpspitlsrkvtsdakekkalisreiksavekdgasatidlwtdnyikrnflgvtlhyhennelrdlilglksldferstaeniykklkaifsqfnvedlssikfvtdrganvvkslannirincsshllsnvlensfeetpelnmpilacknivkyfkkanlqhrlrsslksecptrWnstytmlrsildnwesviqilseagetqrivhinksiiqtmvnildgferifkelqtcsspslcfvvpsilkvkeicspdvgdvadiaklkvniiknvriiweenlsiwhytafffyppalhmqqekvaqikefclskmedpvcpsdefefyrkeivilsedfkvmewwnlnskkypklsklalsllsipassaasertfslagniitekrnrigqqtvdsllflnsfyknfck
interface signature	RQTSNRSW

Estimated binding specificities ?

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# IC=4.434 IC/col=0.317 n_of_columns=14

specificity:

A |  13  96   0   0  24  24  24  24  24  24  24  24  24  13
C |  13   0  96   0  24  24  24  24  24  24  24  24  24  13
G |  16   0   0   0  24  24  24  24  24  24  24  24  24  16
T |  54   0   0  96  24  24  24  24  24  24  24  24  24  54

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updated Wed Dec 18 16:58:16 2024