8ejo_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA
reference	Aihara et al. Iscience 26 107823 2023
source	Ornithorhynchus anatinus
experiment	X-ray (resolution=2.67, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	8ejp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ejo_A interface=2,5,47,50,51, aRrkRttfnktqleilvksfnkdpypgigvrehlasliqipesriqVwfQNrrarq > 8ejo_B interface=2,5,47,50,51,55, aRrkRttfnktqleilvksfnkdpypgigvrehlasliqipesriqVwfQNrraRq
interface signature	RRVQN/RRVQNR

Estimated binding specificities ?

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# IC=10.950 IC/col=0.842 n_of_columns=13

specificity:

A |   5   0   0  96  13  24  18  24  96   0   0  62   0
C |   7   0   0   0   5  24  11  24   0   0   0  12  96
G |  11   0  96   0  11  24  11  24   0   0   0  11   0
T |  73  96   0   0  67  24  56  24   0  96  96  11   0

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updated Mon Dec 16 00:52:44 2024