8ejp_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA CONTAINING 5-BROMOURACIL (Homeobox domain-containing protein)
reference	Aihara et al. Iscience 26 107823 2023
source	Ornithorhynchus anatinus
experiment	X-ray (resolution=2.17, R-factor=0.240)
structural superfamily	Homeodomain-like;
sequence family	Homeobox domain;
multimeric complexes	8ejo_AB 8ejp_AB
redundant complexes	8ejo_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ejp_B interface=2,5,47,50,51,55, aRrkRttfnktqleilvksfnkdpypgigvrehlasliqipesriqVwfQNrraRq
interface signature	RRVQNR

Estimated binding specificities ?

readout + contact

# IC=3.142 IC/col=0.786 n_of_columns=4

specificity:

A |  54   0   0  57
C |  13   0  96  13
G |  16   0   0  13
T |  13  96   0  13

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --RC--IAQCNAYC--   L         +-----------------------------3rkq_B    
                             +-2 
  RART--VTKGNA--KA   L     +-3 +-----------------------------2lkx_A    
                           ! ! 
  --RT--IAQCNAMG--   L   +-4 +-----------------------------1b72_A    
                         ! ! 
  --RTQTVAQTNA----   L   ! !                            +8osb_E    
                       --5 +----------------------------1 
  ------NCICNARGRG   L   !                              +4xrm_B    
                         ! 
  --RTYTNC--NAKG--   L   +-----------------------------8pi8_B

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updated Wed Dec 18 16:59:47 2024