8ejp_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE HOMEODOMAIN OF PLATYPUS SDUX IN COMPLEX WITH DNA CONTAINING 5-BROMOURACIL
reference	Aihara et al. Iscience 26 107823 2023
source	Ornithorhynchus anatinus
experiment	X-ray (resolution=2.17, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	8ejp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ejp_A interface=2,5,47,50,51, aRrkRttfnktqleilvksfnkdpypgigvrehlasliqipesriqVwfQNrrarq > 8ejp_B interface=2,5,47,50,51,55, aRrkRttfnktqleilvksfnkdpypgigvrehlasliqipesriqVwfQNrraRq
interface signature	RRVQN/RRVQNR

Estimated binding specificities ?

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# IC=12.241 IC/col=1.020 n_of_columns=12

specificity:

A |   0  11  85  96   0  91  73  62  96   0   0  96
C |   5  16   0   0   0   5   5  11   0   0  96   0
G |  86  13  11   0   0   0   7  11   0   0   0   0
T |   5  56   0   0  96   0  11  12   0  96   0   0

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updated Mon Dec 16 00:52:51 2024