8g87_X : 3D-footprint complex

structure name	HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN NMATN1 SEQUENCE (FOCUSED REFINEMENT OF OCT4 BOUND REGION)
experiment	NMR
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
sequence family	Pou domain Nterminal to homeobox domain;
redundant complexes	8g8e_X
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8g87_X interface=41,42,43,46,47,120,123,124,127,131, kalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfSQTtiCRfealqlsfknmcklrpllqkwveeadnnenlqeienrvrgnlenlflqcpkptlqqishiaqqlglekdvvrVwfCNrrQkgkRs
interface signature	SQTCRVCNQR

Estimated binding specificities ?

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# IC=1.745 IC/col=0.194 n_of_columns=9

specificity:

A |  38  10  12  24  12  14  34  13  56
C |  19  10  12  24  12  52  20  13  13
G |  20  13  12  24  60  16  20  13  13
T |  19  63  60  24  12  14  22  57  14

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updated Wed Dec 18 17:15:02 2024