8g8e_X : 3D-footprint complex

structure name	HUMAN OCT4 BOUND TO NUCLEOSOME WITH HUMAN LIN28B SEQUENCE
experiment	NMR
structural superfamily	lambda repressor-like DNA-binding domains;Homeodomain-like;
sequence family	Pou domain Nterminal to homeobox domain;
reference complex	8g87_X
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8g8e_X interface=41,42,43,46,47,86,128,131,132,135,139, kalqkeleqfakllkqkritlgytqadvgltlgvlfgkvfSQTtiCRfealqlsfknmcklrpllqkwveeadnnenlqeirkrkRtsienrvrgnlenlflqcpkptlqqishiaqqlglekdvvrVwfCNrrQkgkRs
interface signature	SQTCRRVCNQR

Estimated binding specificities ?

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# IC=3.580 IC/col=0.398 n_of_columns=9

specificity:

A |  13  56  20   8   0  15  72  66  19
C |  13  13  22   8   0  15   8  10  20
G |  13  14  20  72   0  15   8  10  19
T |  57  13  34   8  96  51   8  10  38

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updated Fri Sep 13 11:19:35 2024