8hig_AB : 3D-footprint complex

structure name	CO-CRYSTAL STRUCTURE OF C-TERMINAL DNA BINDING DOMAIN OF SACCHAROPOLYSPORA ERYTHRAEA GLNR IN COMPLEX WITH ITS COGNATE PROMOTER DNA
reference	Zhang et al. 'To ? ? ?
source	Saccharopolyspora erythraea NRRL 2338
experiment	X-ray (resolution=2.33, R-factor=?)
structural superfamily	C-terminal effector domain of the bipartite response regulators;
reference complex	8hig_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8hig_A interface=63,64,66,67,70,71, gdgmltvgdlvieestytarlkgraleltykefellkylaqhagrvftraqllqevwgyggtRTvDVhvRRlraklgpeydsmigtvrnvgykfvrps > 8hig_B interface=56,57,59,60,64,81, vgdlvieestytarlkaleltykefellkylaqhagrvftraqllqevwgydfgtRTvDVhvrRlraklgpeydsmigtvRnvgykfvrp
interface signature	RTDVRR/RTDVRR

Estimated binding specificities ?

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# IC=11.947 IC/col=0.703 n_of_columns=17

specificity:

A |   0  10  24  75   0  96  24  24  24  24  10   0  66  75  96   0  96
C |   0  10  24  10  96   0  24  24  24  24  11   0   5  10   0  96   0
G |  96  11  24   5   0   0  24  24  24  24  70  96   5   6   0   0   0
T |   0  65  24   6   0   0  24  24  24  24   5   0  20   5   0   0   0

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updated Mon Dec 16 04:05:29 2024