8him_AB : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

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updated Thu Jan 8 02:14:35 2026

structure name	A CRYO-EM STRUCTURE OF B. OLERACEA RNA POLYMERASE V ELONGATION COMPLEX AT 2.73 ANGSTROM
experiment	NMR
structural superfamily	beta and beta-prime subunits of DNA dependent RNA-polymerase;Eukaryotic RPB5 N-terminal domain;RPB5-like RNA polymerase subunit;
reference complex	8him_B 8him_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8him_A interface=446, gfssrsvitgdafrnvnevgipmeiahritfeervsvhnigylqelvdnkmclsytqgsttyslrtvlkpgqivhrrvmdgdvvfinrpptthkhslqalrvyvhedntvkinplmcgplsadfdgdcvhlfypqsltakaevlelfsvdkqlrsshtgqlilqlgldsllslrvmmeqvfldkasaqqlamygsrslpspavvkssksgpawtffqilqlafperlscrgdgfivggsdllsfdfgvdalasiingivtgimvekgpkealaffdslqpllmehldpqgfslsledlsmsredmgvihnlivreispmvsrlrlsyedelqlensiqkvkevaanfmlksysmrnlidiksnsainklvqqigflglqlsdkkklytktlvedmaqfykkkyvstsssgdfgivkgcffhgldpyeemahsvaarevivrssrgLaepgtlfknlmavlrdivitndgtvrntcsnsivqfkyelssdnenqglfeagdpvgvlaatamsnpaykavldsspnsnsswelmkevllckvnfqnttndrrvilylnecrcgkkycqensaytvrnklkkvslkdtaveflveyriclhghihlnktllegwnismqdilqrcedainslvqkkkkkaedfkkmnlsvseccsfrgpgsskdsdmpclmfssynatdpdlertldvlcntiypvlletvikgdpriasaniiwnspetttwirslhasrrgewvldvtveksdvkqsgdawrvvidsclsvlhlidtkrsipysikqvqellglscafeqavqrlsasvrkvskgvlkehiilvannmtcsgdmlgfnyggykaltrsltgsqfellwn > 8him_B interface=158,160,175,179,180,182,184,201,273,274,322,323,350,395,397,398,425,429,432,433,436, vdlrdlgepflqsfckkaatsffdeyglvshqlnsynffiehglqsvfessgemlvepyatvkfgevsvdkptlysddkelvflpwharlqnmtysarmkvnvdvevtqdipigripvmvksvlcntteyrkgecafdqggyfvikgaekvfiaqeqIcTkrlwisnspwtvsyRsetKRnRfIvrlsenqkrkekvltvYflsteipvwvlffalgvasdkeavdliafdggdasitnsvvasiqeadsvcedfrhgrnalayveqqikgtKFppgesvdeclslylfpglksltqkarflgymvkclfsayagkrkcenRDnfrnkrielagellerelrvhlaharRtmtkamqrhltgdgdlkpiehyldasiitnglsrafstgawchpFrKMervsgvvanlgranplqslidlrrtrQqvlYtgRVgdAryphpshwgrlcflstpdgencglvknlsllglvstqimepvveelfdsgmeelmddtstplsgkhkvllngdwvgvcsdsdyfvadlksrrrqselprqmeikldkddkevriftdagrllrpllvvenlhklkqskpskytfehlldqgileligieeeedcttawgtkqllkqqksythceldlsfllgvscaivpfanhdhgrrvlyqsqkhcqqaigfcstnpnircdtlsqqlfypqrplfktmaseclqkdvlfngqnaivavnvhlgfnqedsivmnkaslergmfrseqirsykadvdsvvqfgkthskigrvdsldddgfpfvganmhsgdivigrctesgtdhsvklkhtergivqkvvlssnddgknyatvslrqvrspclgdkfssmhgqkgvlgyieeqenfaftnqgivpdivinphafpsrqtpgqlleaalskgiacpmqkkkgksdayskvtrhatpfstpsvdditdqlhragfsrsgnervyngrtgemmrslifmgpnfyqrlihmsedkvkfr