legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.

home
updated Sat Sep 14 10:51:34 2024

structure name	A CRYO-EM STRUCTURE OF B. OLERACEA RNA POLYMERASE V ELONGATION COMPLEX AT 2.73 ANGSTROM
experiment	NMR
structural superfamily	beta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence family	RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 5;
multimeric complexes	8him_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8him_B interface=158,160,175,179,180,182,184,201,273,274,322,323,350,395,397,398,425,429,432,433,436, vdlrdlgepflqsfckkaatsffdeyglvshqlnsynffiehglqsvfessgemlvepyatvkfgevsvdkptlysddkelvflpwharlqnmtysarmkvnvdvevtqdipigripvmvksvlcntteyrkgecafdqggyfvikgaekvfiaqeqIcTkrlwisnspwtvsyRsetKRnRfIvrlsenqkrkekvltvYflsteipvwvlffalgvasdkeavdliafdggdasitnsvvasiqeadsvcedfrhgrnalayveqqikgtKFppgesvdeclslylfpglksltqkarflgymvkclfsayagkrkcenRDnfrnkrielagellerelrvhlaharRtmtkamqrhltgdgdlkpiehyldasiitnglsrafstgawchpFrKMervsgvvanlgranplqslidlrrtrQqvlYtgRVgdAryphpshwgrlcflstpdgencglvknlsllglvstqimepvveelfdsgmeelmddtstplsgkhkvllngdwvgvcsdsdyfvadlksrrrqselprqmeikldkddkevriftdagrllrpllvvenlhklkqskpskytfehlldqgileligieeeedcttawgtkqllkqqksythceldlsfllgvscaivpfanhdhgrrvlyqsqkhcqqaigfcstnpnircdtlsqqlfypqrplfktmaseclqkdvlfngqnaivavnvhlgfnqedsivmnkaslergmfrseqirsykadvdsvvqfgkthskigrvdsldddgfpfvganmhsgdivigrctesgtdhsvklkhtergivqkvvlssnddgknyatvslrqvrspclgdkfssmhgqkgvlgyieeqenfaftnqgivpdivinphafpsrqtpgqlleaalskgiacpmqkkkgksdayskvtrhatpfstpsvdditdqlhragfsrsgnervyngrtgemmrslifmgpnfyqrlihmsedkvkfr