interface graph thumbnail
legend  pdf

structure nameCO-CRYSTAL STRUCTURE OF THE C TERMINAL DNA BINDING DOMAIN OF SACCHAROPOLYSPORA ERYTHRAEA GLNR IN COMPLEX WITH ITS CONSERVED PROMOTER DNA IN 2.95 ANGSTROM RESOLUTION
(DNA-binding response OmpR family regulator)
referenceXu et al. Proc.Natl.Acad.Sci.USA 120 e2300282120 2023
sourceSaccharopolyspora erythraea NRRL 2338
experimentX-ray (resolution=2.95, R-factor=0.262)
structural superfamilyC-terminal effector domain of the bipartite response regulators;
sequence familyTranscriptional regulatory protein, C ter;
multimeric complexes8hml_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRTDVRRR

Estimated binding specificities ?

contactlogo
# IC=7.140 IC/col=1.020 n_of_columns=7 specificity:   
A |  13   0   0  54  96   0  96
C |  57   0   0  13   0  96   0
G |  13  96   0  13   0   0   0
T |  13   0  96  16   0   0   0
scan!

home
updated Wed Dec 20 03:36:51 2023