8ibw_C : 3D-footprint complex

structure name	STRUCTURE OF R2 WITH 3'UTR AND DNA IN BINDING STATE
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
reference complex	8gh6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ibw_C interface=15,39,41,81,84,88,488,490, gwtcqfcertfstnRglgvhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgsspdaarvlsellegagrrracramtsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaydlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlrmldvqirkavgqwlrlpadvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsrgrrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpaiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RKREKRHK

Estimated binding specificities ?

contact

# IC=10.796 IC/col=0.830 n_of_columns=13

specificity:

A |   3  24   0   0  24  79  81   3   0   4   6   3   3
C |   3  24   0   0  24   5   6  86   0   3  69   3   0
G |  87  24  96   0  24   6   6   4  96  86   3  87  89
T |   3  24   0  96  24   6   3   3   0   3  18   3   4

scan!

home
updated Mon Jun 29 08:40:38 2026