8ibw_C : 3D-footprint complex

structure name	STRUCTURE OF R2 WITH 3'UTR AND DNA IN BINDING STATE
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
reference complex	8gh6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ibw_C interface=15,39,41,81,84,88,488,490, gwtcqfcertfstnRglgvhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgsspdaarvlsellegagrrracramtsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaydlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlrmldvqirkavgqwlrlpadvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsrgrrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpaiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RKREKRHK

Estimated binding specificities ?

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# IC=10.720 IC/col=0.825 n_of_columns=13

specificity:

A |   3  24   0   0  24  79  76   0   0   3  15   3   0
C |   3  24   0   0  24   3  11  88   0   6  49   0   0
G |  87  24  96   0  24   3   3   3  96  84  17  88  96
T |   3  24   0  96  24  11   6   5   0   3  15   5   0

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updated Sun Aug 3 01:06:25 2025