8gh6_A : 3D-footprint complex

structure name	BOMBYX MORI R2 RETROTRANSPOSON INITIATING TARGET-PRIMED REVERSE TRANSCRIPTION
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
redundant complexes	8ibw_C 8ibx_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8gh6_A interface=15,19,39,41,81,84,88,464,466,555,574,713,715, gwtcqfcertfstnRglgVhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgstsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaddlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlRmldvqirkavgqwlrlpaDvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsRgRrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpdiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RVKREKRHKRDRR

Estimated binding specificities ?

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# IC=11.894 IC/col=0.425 n_of_columns=28

specificity:

A |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4   0   0  76  12   0   4  24   8   8  24  96   0
C |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4  88  96  12  12  96  92  24   8   8  24   0  96
G |  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   4   0   4  64   0   0  24   8  12  24   0   0
T |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  88   4   0   4   8   0   0  24  72  68  24   0   0

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updated Wed Dec 18 17:17:15 2024