8gh6_A : 3D-footprint complex

structure name	BOMBYX MORI R2 RETROTRANSPOSON INITIATING TARGET-PRIMED REVERSE TRANSCRIPTION
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
redundant complexes	8ibw_C 8ibx_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8gh6_A interface=15,19,39,41,81,84,88,464,466,555,574,713,715, gwtcqfcertfstnRglgVhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgstsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaddlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlRmldvqirkavgqwlrlpaDvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsRgRrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpdiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RVKREKRHKRDRR

Estimated binding specificities ?

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# IC=12.100 IC/col=0.432 n_of_columns=28

specificity:

A |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   5   0  75   5   0   3  24  15   6  24  96   0
C |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5  85  96  15   6  96  90  24   3  10  24   0  96
G |  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   3   0   3  82   0   3  24   3  13  24   0   0
T |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  85   3   0   3   3   0   0  24  75  67  24   0   0

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updated Mon Aug 4 00:14:20 2025