8ibx_C : 3D-footprint complex

structure name	STRUCTURE OF R2 WITH 3'UTR AND DNA IN UNWINDING STATE
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
reference complex	8gh6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ibx_C interface=15,19,39,41,81,84,88,488,490, gwtcqfcertfstnRglgVhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgsspdaarvlsellegagrrracramtsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaydlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlrmldvqirkavgqwlrlpadvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsrgrrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpaiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RVKREKRHK

Estimated binding specificities ?

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# IC=12.906 IC/col=0.922 n_of_columns=14

specificity:

A |   0  11  15   9   0   0   0   8   4  24  96   0   0   0
C |  92  64  60   6  96  96   3   9   0  24   0  96  96  96
G |   3  12  12  69   0   0  89   9   3  24   0   0   0   0
T |   1   9   9  12   0   0   4  70  89  24   0   0   0   0

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updated Sun Aug 3 01:07:04 2025