8ibx_C : 3D-footprint complex

structure name	STRUCTURE OF R2 WITH 3'UTR AND DNA IN UNWINDING STATE
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
reference complex	8gh6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ibx_C interface=15,19,39,41,81,84,88,488,490, gwtcqfcertfstnRglgVhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgsspdaarvlsellegagrrracramtsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaydlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlrmldvqirkavgqwlrlpadvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsrgrrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpaiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RVKREKRHK

Estimated binding specificities ?

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# IC=13.012 IC/col=0.929 n_of_columns=14

specificity:

A |   3   8  12  12   0   0   3   7   0  24  96   0   0   0
C |  92  66  70  11  96  96   3  11   3  24   0  96  96  96
G |   0  11  14  62   0   0  84   8   1  24   0   0   0   0
T |   1  11   0  11   0   0   6  70  92  24   0   0   0   0

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updated Mon Jun 29 08:41:31 2026