8ibx_C : 3D-footprint complex

structure name	STRUCTURE OF R2 WITH 3'UTR AND DNA IN UNWINDING STATE
experiment	NMR
structural superfamily	DNA/RNA polymerases;
sequence family	Reverse transcriptase RNAdependent DNA pol; Zinc finger, C2H2 type;
reference complex	8gh6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ibx_C interface=15,19,39,41,81,84,88,488,490, gwtcqfcertfstnRglgVhkrrahpvetntdaapmmvKrRwhgeeidllartearllaergqcsggdlfgalpgfgrtlEaiKgqrRrepyralvqahlarfgsspdaarvlsellegagrrracramtsrqkrraeyarvqelykkcrsraaaevidgacggvghsleemetywrpilervsdapgptpealhalgrtqlwkpisveeikasrfdwrtspgpdgirsgqwravpvhlkaemfnawmargeipeilrqcrtvfvpkverpggpgeyrpisiasiplrhfhsilarrllaccppdarqrgficadgtlensavldavlgdsrkklrechvavldfakafdtvshealvellrlrgmpeqfcgyiahlydtasttlavnnemsspvkvgrgvrqgdplspilfnvvmdlilaslpervgyrlemelvsalayaydlvllagskvgmqesisavdcvgrqmglrlncrksavlsmipdgHrKkhhyltertfniggkplrqvscverwrylgvdfeasgcvtlehsissalnnisraplkpqqrleilrahliprfqhgfvlgnisddrlrmldvqirkavgqwlrlpadvpkayyhaavqdgglaipsvratipdlivrrfggldsspwsvaraaaksdkirkklrwawkqlrrfsrvdsttqrpsvrlfwrehlhasvdgrelrestrtptstkwirercaqitgrdfvqfvhthinalpsrirgsrgrrgggessltcragckvrettahilqqchrthggrilrhnkivsfvakameenkwtveleprlrtsvglrkpaiiasrdgvgvivdvqvvsgqrsldelhrekrnkygnhgelvelvagrlglpkaecvratsctiswrgvwsltsykelrsiiglreptlqivpilalrgshmnwtrfnqmts
interface signature	RVKREKRHK

Estimated binding specificities ?

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# IC=12.959 IC/col=0.926 n_of_columns=14

specificity:

A |   1  10  10  12   0   0   3   8   5  24  96   0   0   0
C |  92  67  76  10  96  96   5  10   3  24   0  96  96  96
G |   3  10  10  64   0   0  85   7   3  24   0   0   0   0
T |   0   9   0  10   0   0   3  71  85  24   0   0   0   0

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updated Fri Sep 13 11:45:31 2024