8ifk_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF MONOMERIC SPARTA GRNA-SSDNA TARGET COMPLEX
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifk_A interface=257,352,356,363, rnkifishatpedddftrwlslkliglgyevwcdilfldkfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlidfkkswakglqdlldafekqnvpkkppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifk_B interface=67,68,70,71,72,167,168,171,234,308,309,310,337,338,339,341, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeittydlvtlfndkiitanrvdvwfvivpeedaqfhdqlkarllehtiptqilrestlawrdfkntfgapirDFskIeghlawtistaayykaggkpwklgdirpgvcylglvykkieqnaccaaqmflgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegAFPimrgnayivdekkaflwtlgfvpklqSTLsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltastpplafkyyi
interface signature	RHRW/HNITRDFIYAFPSTLM

Estimated binding specificities ?

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# IC=13.665 IC/col=0.804 n_of_columns=17

specificity:

A |  96   0  24  24  12  24  24  24   0   0  12   0   0   0   0  96   0
C |   0   0  24  24  12  24  24  24   0  96  48   0   0   0   0   0   0
G |   0  96  24  24  24  24  24  24  96   0  24  96   0   0   0   0   0
T |   0   0  24  24  48  24  24  24   0   0  12   0  96  96  96   0  96

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updated Mon Dec 16 04:47:15 2024