interface graph thumbnail
legend  pdf

structure nameCRYO-EM STRUCTURE OF MONOMERIC SPARTA GRNA-SSDNA TARGET COMPLEX
experimentNMR
structural superfamilyRibonuclease H-like;
multimeric complexes8ifk_AB 8ifl_AB 8ifl_FG 8ifl_JK 8ifl_NO 8ifm_AB 8ifm_FG 8ifm_JK 8ifm_NO 8isz_AB 8it0_AB 8it0_EF 8it1_AB 8it1_EF 8it1_IJ 8it1_MN 8j8h_AB 8j9g_AB 8j9p_AB 8j9p_CD 8jay_AB 8jay_CD 8jay_IJ 8jay_MN 8k9g_AB 8k9g_EF 8u72_BC 8u72_DE 8u72_FG 8u72_HI
redundant complexes8ifl_B 8ifm_O 8it0_A 8j9g_A 8jay_I 8u72_C 8isz 8it1 8j8h 8j9p 8k9g
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHNITRDFIYAFPSTLM

Estimated binding specificities ?

contactlogo
# IC=6.128 IC/col=0.471 n_of_columns=13 specificity:   
A |  19  24  24  24  24  24  24  12   0   0   0  96   9
C |  19  24  24  24  24  24  24  12   0   0   0   0   9
G |  19  24  24  24  24  24  24  60   0   0   0   0  11
T |  39  24  24  24  24  24  24  12  96  96  96   0  67
scan!

home
updated Wed Dec 18 18:27:33 2024