8ifl_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 1
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifl_A interface=258,284,353,357,364, rnkifishatpedddftrwlslkliglgyevwcdilfldkgvdfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifl_B interface=67,68,70,71,72,175,178,213,248,323,324,351,352,353,355,391, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirdFskIeghlawtistaayykaggkpwklggvcylglvykKiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpklqSTLsMevpnpifieinkgeaeiqqvlkdilaltklnynacIyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RKHRW/HNITRFIKYFPSTLMI

Estimated binding specificities ?

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# IC=11.096 IC/col=0.694 n_of_columns=16

specificity:

A |  96   0  24  13  13  24  24  24   0   0  24  24   0   0   0  96
C |   0   0  24  13  13  24  24  24   0  96  24  24   0   0   0   0
G |   0  96  24  16  16  24  24  24  96   0  24  24   0   0   0   0
T |   0   0  24  54  54  24  24  24   0   0  24  24  96  96  96   0

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updated Mon Dec 16 04:47:38 2024