8ifl_FG : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 1
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifl_F interface=255,281,350,354,361, nkifishatpedddftrwlslkliglgyevwcdilfldfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifl_G interface=67,68,70,71,72,174,175,178,249,324,325,350,352,353,354,392, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirDFskIeghlawtistaayykaggkpwklgpgvcylglvykkiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpkLqSTLsmevpnpifieinkgeaeiqqvlkdilaltklnynacIyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RKHRW/HNITRDFIYFPLSTLI

Estimated binding specificities ?

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# IC=8.287 IC/col=0.518 n_of_columns=16

specificity:

A |  96  12  24  24  12  38  24  24   9   9  21  24   0   0   0  96
C |   0  12  24  24  12  19  24  24   9  69  31  24   0   0   0   0
G |   0  60  24  24  12  19  24  24  69   9  21  24   0   0   0   0
T |   0  12  24  24  60  20  24  24   9   9  23  24  96  96  96   0

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updated Mon Dec 16 04:47:59 2024