8ifl_NO : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 1
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifl_N interface=255,281,350,354,361, nkifishatpedddftrwlslkliglgyevwcdilfldfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifl_O interface=68,70,71,72,174,175,178,213,248,323,324,351,352,355, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirDFskIeghlawtistaayykaggkpwklpgvcylglvykKiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpklqSTlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RKHRW/NITRDFIKYFPSTM

Estimated binding specificities ?

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# IC=6.995 IC/col=0.466 n_of_columns=15

specificity:

A |  12  24  24  14  52  24  24  14   9  21  12   0   0   0  96
C |  12  24  24  14  14  24  24  16  67  33  12   0   0   0   0
G |  60  24  24  14  16  24  24  52   9  21  60   0   0   0   0
T |  12  24  24  54  14  24  24  14  11  21  12  96  96  96   0

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updated Mon Dec 16 04:48:38 2024