8ifm_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 2
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifm_A interface=258,353,357,364, rnkifishatpedddftrwlslkliglgyevwcdilfldkgvdfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifm_B interface=67,68,70,71,72,175,178,214,249,324,325,352,353,354,356,392, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirdFskIeghlawtistaayykaggkpwklgpgvcylglvykKiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpklqSTLsMevpnpifieinkgeaeiqqvlkdilaltklnynacIyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RHRW/HNITRFIKYFPSTLMI

Estimated binding specificities ?

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# IC=10.669 IC/col=0.667 n_of_columns=16

specificity:

A |  96   0  24  24   9  24  24  24   0   0   9  24   9   0   0  96
C |   0   0  24  24   9  24  24  24   0  96  67  24   9   0   0   0
G |   0  96  24  24  11  24  24  24  96   0  11  24   9   0   0   0
T |   0   0  24  24  67  24  24  24   0   0   9  24  69  96  96   0

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updated Mon Dec 16 04:49:00 2024