8ifm_FG : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 2
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifm_F interface=255,350,354,361, nkifishatpedddftrwlslkliglgyevwcdilfldfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifm_G interface=67,68,70,71,72,175,178,249,324,325,353,356, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirdFskIeghlawtistaayykaggkpwklgpgvcylglvykkiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpklqsTlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RHRW/HNITRFIYFPTM

Estimated binding specificities ?

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# IC=12.002 IC/col=0.750 n_of_columns=16

specificity:

A |  96   0  24  24   9  24  24  24   0   0   9   9   0   0   0  96
C |   0   0  24  24   9  24  24  24   0  96  67   9   0   0   0   0
G |   0  96  24  24   9  24  24  24  96   0  11  67   0   0   0   0
T |   0   0  24  24  69  24  24  24   0   0   9  11  96  96  96   0

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updated Fri Aug 1 11:39:09 2025