8ifm_JK : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 2
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifm_J interface=258,353,357,364, rnkifishatpedddftrwlslkliglgyevwcdilfldkgvdfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsktfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifm_K interface=67,68,70,71,72,173,175,178,249,324,325,352,353,356, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapiRdFskIeghlawtistaayykaggkpwklgpgvcylglvykkiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpklqSTlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RHRW/HNITRRFIYFPSTM

Estimated binding specificities ?

contact

# IC=12.429 IC/col=0.777 n_of_columns=16

specificity:

A |  96   0  24  24  13  24  24  24   0   0  13   0   0   0   0  96
C |   0   0  24  24  13  24  24  24   0  96  54   0   0   0   0   0
G |   0  96  24  24  16  24  24  24  96   0  13  96   0   0   0   0
T |   0   0  24  24  54  24  24  24   0   0  16   0  96  96  96   0

scan!

home
updated Mon Dec 16 04:49:29 2024