8ifm_NO : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TETRAMERIC SPARTA GRNA-SSDNA TARGET COMPLEX IN STATE 2
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifm_N interface=255,281,350,354,361, nkifishatpedddftrwlslkliglgyevwcdilfldfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivqlinkafelrmkdknvreyqmsKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwWndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtps > 8ifm_O interface=67,68,70,71,72,175,178,214,249,324,325,352,353,356, mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynHNnITRpmfpgfeavfgckwesqnivfkeitkrtydlvtlfndkiitankndeervdvwfvivpeydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirdFskIeghlawtistaayykaggkpwklgpgvcylglvykKiqnaccaaqmfldngdgtvfkgevgpwynpekgeYhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegaFPimrgnayivdekkaflwtlgfvpklqSTlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi
interface signature	RKHRW/HNITRFIKYFPSTM

Estimated binding specificities ?

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# IC=12.332 IC/col=0.771 n_of_columns=16

specificity:

A |  96   0  24  24   0  48  24  24   0   0  24  24   0   0   0  96
C |   0   0  24  24   0  12  24  24   0  96  48  24   0   0   0   0
G |   0  96  24  24   0  12  24  24  96   0  12  24   0   0   0   0
T |   0   0  24  24  96  24  24  24   0   0  12  24  96  96  96   0

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updated Mon Dec 16 04:49:52 2024