8ifo_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ESTROGEN RELATED RECEPTOR-GAMMA DNA BINDING DOMAIN COMPLEXED WITH PLA2G12B PROMOTER
reference	Zhen et al. Biochem.Biophys.Res.Commun. 656 16 2023
source	Homo sapiens
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1lo1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifo_A interface=22,25,26,29,30,75, krlclvcgdiasgyhygvascEacKAffKRtiqgnieyscpatneceitkrrrkscqacrfmkclkvgmlkegvRl > 8ifo_B interface=23,26,27,30,31, pkrlclvcgdiasgyhygvascEacKAffKRtiqgnieyscpatneceitkrrrkscqacrfmkclkvgmlkegvrldrv
interface signature	EKAKRR/EKAKR

Estimated binding specificities ?

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# IC=7.099 IC/col=0.710 n_of_columns=10

specificity:

A |  54   0   0  24  24  13   0  24   0   0
C |  16  96  96  24  24  13   0  24  96  96
G |  13   0   0  24  24  16  96  24   0   0
T |  13   0   0  24  24  54   0  24   0   0

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updated Thu Sep 12 02:59:15 2024