8it0_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF CRT-SPARTA-GRNA-TDNA DIMER (CONFORMATION-2)
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8it0_A interface= mkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhnnitrpmfpgfeavfgckwesqnivfkeitdeeirrylfnasthkrtydlvtlfndkiitankndeervdvwfvivpeeiykycrpnsvlynydaqfhdqlkarllehtiptqilrestlawrdfkntfgapirdfskieghlawtistaayykaggkpwklgdirpgvcylglvykkieksknpqnaccaaqmfldngdgtvfkgevgpwynpekgeyhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkskplklyktegafpimrgnayivdekkaflwtlgfvpklqstlsmevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi > 8it0_B interface=289,358,362,366,434,435,439,442, mrnkifishatpedddftrwlslkliglgyevwcdilfldkgvdfwstiekeirentckflivsstagnkregvlkelavatkvkkhlqddmfiiplaidenlsyddinieivrlnaidfkkswakglqdlldafekqnvpkkppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqrlivqlinkafelrmkdknvreyqmsKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgKnwwndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtpsevtleeesvladiNNfeeDteDldeledie
interface signature	/KHRKNNDD

Estimated binding specificities ?

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# IC=4.207 IC/col=0.467 n_of_columns=9

specificity:

A |   9  19  24  24  24  24   2  96   0
C |  67  19  24  24  24  24  90   0   0
G |   9  20  24  24  24  24   2   0   0
T |  11  38  24  24  24  24   2   0  96

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updated Mon Dec 16 05:05:25 2024