8iue_34BEPUVW : 3D-footprint complex

Interface of input file ?

structure name	RNA POLYMERASE III PRE-INITIATION COMPLEX MELTING COMPLEX 1
experiment	NMR
structural superfamily	TATA-box binding protein-like;Homeodomain-like;"Winged helix" DNA-binding domain;Cyclin-like;Zinc beta-ribbon;
reference complex	5iy6_P 7xur_B 7zwd_c 8ity_P 8ity_V 8ity_W 8iue_1
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8iue_3 interface=114,156,158, vsgsggcnfpeyelpelntrafhvgafgelwrgrlrgagdlslrepaadsdredaavardldcsleaaaelravcgldklkevipentdlvtlgvrkrflehreetitidracRqetfvyemeshaigkkpensadmieegelilsvnilypvifHkHkehkpyqtmlvlgsqkltqlrdsircvsdlqiggefsntpdqapehiskdlyksaffyfegtfyndkrypecrdlsrtiiewseshdrgygkfqtarmedftfndlciklgfpylychqgdcehvivitdirlvhhddcldrtlypllikkhwlwtrkcfvckmytarwvtnndsfapedpcffcdvcfrmlhydsegnklgeflaypyvdpgtfn > 8iue_4 interface=237,240,241,244,245,255,292,293,341,344, yfkdkvtgvgppanedtrekaaqgikafeellvtkwknwekallrksvvsdrlqrllqpkllkleylhqkqskvsselerqalekqgreaekeiqdinqlpeeallgnrldshdwekisninfegsrsaeeirkfwqnsehpsinkqewsreeeerlqaiaaahghlewqkiaeelgtsrsafqclqkfqqhnkalkrkewteeedrmltqlvqemrvgshipyrrivyymegrdsMqlIYrwTKsldpglkkgYwapeedakllqavakygeqdwfkireevpgrsdaqcRDrylrrlhfslkkgrwnlkeeeqlieliekygvghwakiaselphrsgSqcLskwkimmgkkqglrrrrrrar > 8iue_B interface=280,377, apiptveekwrllpaflkvkglvkqhidsfnyfinveikkimkanekvtsdadpmwylkylniyvglpdveesfnvtrpvsphecrlrdmtysapitvdieytrgsqriirnalpigrmpimlrssncvltgktpaefaklnecpldpggyfivkgvekviliqeqlsknriiveadrkgavgasvtssthekksrtnmavkqgrfylrhntlsedipiviifkamgvesdqeivqmigteehvmaafgpsleecqkaqiftqmqalkyignkvrrqrmWgggpkktkieearellastilthvpvkefnfrakciytavmvrrvilaqgdnkvddrdyygnkrlelagqllsllfedlfkkfnsemkkiadqvipKqraaqfdvvkhmrqdqitngmvnaistgnwslkrfkmdrqgvtqvlsrlsyisalgmmtrissqfektrkvsgprslqpsqwgmlcpsdtpegeacglvknlalmthittdmedgpivklasnlgvedvnllcgeelsypnvflvflngnilgvirdhkklvntfrlmrragyinefvsistnltdrcvyissdggrlcrpyiivkkqkpavtnkhmeelaqgyrnfedflheslveyldvneendcnialyehtinkdtthleiepftllgvcaglipyphhnqsprntyqcamgkqamgtigynqrnridtlmyllaypqkpmvktktieliefeklpagqnatvavmsysgydiedalvlnkasldrgfgrclvyknakctlkrytnqtfdkvmgpmldaatrkpiwrheildadgicspgekvenkqvlvnksmptvtqqpqykdvpitykgatdsyiekvmissnaedaflikmllrqtrrpeigdkfssrhgqkgvcglivpqedmpfcdsgicpdiimnphgfpsrmtvgkliellagkagvldgrfhygtafggskvkdvcedlvrhgynylgkdyvtsgitgepleayiyfgpvyyqklkhmvldkmharargpravltrqptegrsrdgglrlgemerdcligygasmlllerlmissdafevdvcgqcgllgysgwchycksschvsslripyackllfqelqsmniiprlklskyn > 8iue_E interface= ddeeetyrlwkirktimqlchdrgylvtqdeldqtleefkaqsgdkpsegrprrtdltvlvahnddptdqmfvffpeepkvgiktikvycqrmqeenitralivvqqgmtpsakqslvdmapkyileqflqqellinitehelvpehvvmtkeevtellaryklrenqlpriqagdpvaryfgikrgqvvkiirpsetagryityrlvq > 8iue_P interface=97, dpveienriielchqfphgitdqviqnemphieaqqravainrllsmgqldllrsntgllyrikdsqnagkmkgsdnqeklvyqiiedagnkgiwsRdiryksnlplteinkilknleskklikavksvaaskkkvymlynlqpdrsvtggawysdqdfesefvevlnqqcfkflqskaetareskqnpmiqrnssfasshevwkyicelgiskvelsmedietilntliydgkvemtiiaakegtvgsvdghmklyravnpiipptglvrapcglcpvfddcheggeispsnciymtewlef > 8iue_U interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivpqlqNiVstvnlgckldlktialrarnaeynpkrFaavimrireprttaLiFssgkmVcTgakseeqsrlaarkyarvvqklgfpakfldfkiqNmVgscdvkfpirleglvlthqqfssyepelFPgliyrmikprivlLiFvsgkvVlTgakvraeiyeafeniypilkg > 8iue_V interface=62,105,255, rcpdcgstelvedshysqsqlvcsdcgcvvtegvltttfsdegnlrevtysrstgeneqvsRsqqrglrrvrdlcrvlqlpptfedtavayyqqayrhsgiraaRlqkkevlvgccvlitcrqhnwpltmgaictllyadldvfsstymqivkllgldvpslclaelvktycssfklfqaspsvpakyvedkekmlsrtmqlvelanetwlvtgrhplpvitaatflawqslqpadrlscslarfcklanvdlpYpassrlqellavllrmaeqlawlrvlrldkrsvvkhigdllqhrqslvrsafrdlllppcmlkspkricpvppvstvtgdenisdseieqylrtpqevrdfqraqa > 8iue_W interface=22,24, cvveendpifergstttyssfRkNyyskpwsnketdmfflaismvgtdfsmigqlfphrarieiknkfkreektngwridkafqekrpfdfdffahllqkvlaeeekrkqk
interface signature	RHH/MIYTKYRDSL/WK//R/NVFLFVTNVFPLFVT/RRY/RN

Estimated binding specificities ?

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# IC=30.644 IC/col=0.625 n_of_columns=49

specificity:

A |  96   0   0  24  96  85   0   4  24  24  24  96  24   7   0  24  24  24  24  24  24  24  24  24   0   0   5   0   0   0   0   3  96   3  96   5  24  24  24  24  24  24  24  96  85   0  24  24   0
C |   0  96  96  24   0   5  96   7  24  24  24   0  24   7   0  24  24  24  24  24  24  24  24  24   0   0   3   0  96   0   0   5   0   3   0   3  24  24  24  24  24  24  24   0   3   0  24  24  96
G |   0   0   0  24   0   3   0   7  24  24  24   0  24   8   0  24  24  24  24  24  24  24  24  24   0   0  85  96   0   0   0   3   0   3   0   3  24  24  24  24  24  24  24   0   3  96  24  24   0
T |   0   0   0  24   0   3   0  78  24  24  24   0  24  74  96  24  24  24  24  24  24  24  24  24  96  96   3   0   0  96  96  85   0  87   0  85  24  24  24  24  24  24  24   0   5   0  24  24   0

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updated Thu Sep 12 03:14:14 2024