8j54_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RXR/DR2 COMPLEX
reference	Jiang et al. Structure 32 467 2024
experiment	X-ray (resolution=2.72, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	6fbq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8j54_C interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerq > 8j54_D interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqee
interface signature	EKKR/EKKR

Estimated binding specificities ?

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# IC=7.016 IC/col=0.540 n_of_columns=13

specificity:

A |   6   0   4   6  84  24  24  24  24   4   4  24  82
C |   4   0   4  82   4  24  24  24  24   4   6  24   6
G |  82  96   6   4   4  24  24  24  24  84   4  24   4
T |   4   0  82   4   4  24  24  24  24   4  82  24   4

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updated Fri Aug 1 12:01:42 2025