8j8h_AB : 3D-footprint complex

structure name	SPARTA MONOMER BOUND WITH GUIDE-TARGET, STATE 2
experiment	NMR
structural superfamily	Toll/Interleukin receptor TIR domain;Ribonuclease H-like;
reference complex	8ifk_A 8ifk_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8j8h_A interface=188,193,232,336,380, rgsmkeliyieepsilfahgqkctdprdglalfgplnqiygiksgvvgtqkglqifksyldkiqkpiynhnnitrpmfpgfeavfgckwesqnivfkeitdeeirrylfnasthkrtydlvtlfndkiitankndeervdvwfvivpeeifhdqlkarllehtiptqilrestlawrdfkntfgapiRdfskIeghlawtistaayykaggkpwklgdirpgvcylglvykKieksknpqnaccaaqmfldngdgtvfkgevgpwynpekgeyhlkpkeakalltqalesykeqnksypkevfihartrfndeewnafnevtpkntnlvgvtitkSkplklyktegafpimrgnayivdekkaflwtlgfvpklqstlsMevpnpifieinkgeaeiqqvlkdilaltklnynaciyadgepvtlrfankigeiltasteiktpplafkyyi > 8j8h_B interface=125,129,150,151,220,224, nvpkkppdhsksnllyqqiflhdkqaiekeetydsnwfpiisfpnelrfhrydwrlpkqfdvrtlafpairykeylctfaweydfihqlpktetyngqesiristsdilsgrydtdfirnyecqRlivQlinkafelrmkdknvreyqmSKtfaywiekgklekdkfekiklvgkqknkywhfgisaagklypspvlmvsshiiftmdginliksksiqHssrRkqgknwwndkwrekllafirflsddqnaiylnvgseekilisnkplkffgkmsyvtpsevtl
interface signature	RIKSM/RQSKHR

Estimated binding specificities ?

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# IC=3.211 IC/col=0.357 n_of_columns=9

specificity:

A |  96  21  21   0  14  24  13  24  38
C |   0  31  21   0  54  24  56  24  20
G |   0  23  33  96  14  24  13  24  19
T |   0  21  21   0  14  24  14  24  19

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updated Mon Dec 16 05:14:20 2024